PlantTFDB - Plant Transcription Factor Databases @ CBI, PKU
PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information? help Back to Top
TF ID LOC_Os03g15660.1
Common NameLOC4332331, OJ1041F02.11, Os03g0263000, OsJ_10227, OSNPB_030263000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 259aa    MW: 26070 Da    PI: 5.3077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g15660.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-184998255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                       ykGVr ++ +g+Wv+eIr p     +  +r++lg++ t+e Aa+a++aa ++l+g
  LOC_Os03g15660.1 49 PYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 98
                      59****998.**********7.....335************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575128No hitNo description
SMARTSM003806.6E-3449112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-2949108IPR001471AP2/ERF domain
PROSITE profilePS5103221.91849106IPR001471AP2/ERF domain
CDDcd000183.11E-1950108No hitNo description
PfamPF008475.4E-115098IPR001471AP2/ERF domain
PRINTSPR003676.0E-85061IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1950107IPR016177DNA-binding domain
PRINTSPR003676.0E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVKNTSNKCI AAAGATAAAG LGGGAASCSG GGGDGKVTTA AAAALAVRPY KGVRMRSWGS  60
WVSEIRAPHQ KRRIWLGSYA TPEAAARAYD AALLCLKGSD AVLNFPSSAS SRRRLDIHRG  120
GTDSAAGDMS PRSIQRVAAA AAAAFDAAAA AVVVDESCSC SAEAMSSTPT SGATSLSTLG  180
SSGGGDVLDH ATTPSSSSSA AANVCSPPLE GDHELWTELD AFASPKFMDL MAAGGTAFSS  240
PWEEPEEDGE LMRLWSFC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.351110.0flower| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329789580.0
Expression AtlasQ84Q94-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g15660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g15660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352060.0AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630150.10.0PREDICTED: ethylene-responsive transcription factor ERF013
TrEMBLQ84Q940.0Q84Q94_ORYSJ; AP2 domain containing protein, expressed
STRINGLOC_Os03g15660.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1277745
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-24ERF family protein