PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g14810.1
Common NameLOC107277982
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 103aa    MW: 10918.7 Da    PI: 7.3579
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g14810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.3e-08246344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       W+  E  ++ +a +++  +   +W+++a+ +g g+t+ +++ ++
  LOC_Os03g14810.1  2 DWSRAENARFEQALAMYDRDtpgRWERVAAVVGGGKTADDVRRHF 46
                      6*****************99************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.214150IPR017877Myb-like domain
SuperFamilySSF466892.45E-10257IPR009057Homeodomain-like
SMARTSM007177.3E-4252IPR001005SANT/Myb domain
PfamPF002492.2E-6246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MDWSRAENAR FEQALAMYDR DTPGRWERVA AVVGGGKTAD DVRRHFDLLV DDCGSIESGN  60
YGYPGTGAGA GRGSGNGNGN GRDKNNDGNT NRRQSRANGP QT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-173641171RADIALIS
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10NZ9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g14810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g14810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1342401e-159AC134240.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0081I10, complete sequence.
GenBankAP0149591e-159AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630111.17e-69PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB82e-21RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0E0GJT67e-69A0A0E0GJT6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NSJ77e-69A0A0E0NSJ7_ORYRU; Uncharacterized protein
TrEMBLI1P9J67e-69I1P9J6_ORYGL; Uncharacterized protein
TrEMBLQ10NZ97e-69Q10NZ9_ORYSJ; Myb family transcription factor, putative
STRINGLOC_Os03g14810.12e-68(Oryza sativa Japonica Group)
STRINGORGLA03G0104200.12e-68(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-20RAD-like 1