PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g14270.1
Common NameLOC4332242, Os03g0246900, OsJ_10128, OSNPB_030246900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 276aa    MW: 28252.8 Da    PI: 8.1882
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g14270.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.28.9e-41371371100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+a
  LOC_Os03g14270.1  37 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQA 129
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkee 100
                       el +l+++
  LOC_Os03g14270.1 130 ELTYLQAH 137
                       ***99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381272.8E-1341275IPR017394LOB domain-containing protein 18/20
PROSITE profilePS5089123.34836138IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-4037135IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSSGGGASSA LGGGGGGGGS GGGGGGPSGG GGGGGGPCGA CKFLRRKCVS GCIFAPYFDS  60
EQGAAHFAAV HKVFGASNVS KLLLQIPAHK RPDAVVTICY EAQARLRDPV YGCVAHIFAL  120
QQQVVNLQAE LTYLQAHLAT LELPSPPPLM PAPPQMPMPA PFSISDLPSS TSVPTTVDLS  180
ALFDPPPQPQ WASPLQQQQH HHHQHHHHQQ QQHQLRQPSY ATLARAPSGM TAAAESSGGG  240
GGGGGGDLQA LARELLDRHR SAVKLEQPPP PHSRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.831770.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154518900.0
Expression AtlasQ10P52-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g14270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g14270
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC1186720.0AC118672.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0078P24, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629413.10.0PREDICTED: LOB domain-containing protein 30
SwissprotO221316e-71LBD18_ARATH; LOB domain-containing protein 18
SwissprotO813232e-71LBD30_ARATH; LOB domain-containing protein 30
TrEMBLQ10P520.0Q10P52_ORYSJ; LOB domain protein 18, putative
STRINGLOC_Os03g14270.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.17e-68LBD family protein