PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g13310.1
Common NameLOC107278453, OsJ_10063
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 243aa    MW: 25320 Da    PI: 10.5701
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g13310.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-172872348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       W++eEd+ll ++v++ Gg++W  Ia  ++ gRt+k+c++rw+++l
  LOC_Os03g13310.1 28 GWSKEEDKLLRELVRKQGGKDWGVIATAFP-GRTDKSCRLRWRQHL 72
                      5*****************************.************996 PP

2Myb_DNA-binding49.41.1e-1580124248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +++++ Ed ++v++++ +G++ W+tIa+ ++ gR+++ +k+rw+++l
  LOC_Os03g13310.1  80 LPFSAGEDRKIVELHRVHGNR-WATIAAFLP-GRSDNAIKNRWNTHL 124
                       589999***************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.3352176IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-192575IPR009057Homeodomain-like
SMARTSM007176.7E-172574IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-2925120IPR009057Homeodomain-like
PfamPF002491.7E-162872IPR001005SANT/Myb domain
CDDcd001671.46E-162972No hitNo description
SMARTSM007174.9E-1378126IPR001005SANT/Myb domain
PfamPF002499.3E-1481124IPR001005SANT/Myb domain
PROSITE profilePS5129419.00681128IPR017930Myb domain
CDDcd001671.33E-1281124No hitNo description
Gene3DG3DSA:1.10.10.609.3E-2181125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MALEGAAGGG GVGGGGGPPG QEAGKKVGWS KEEDKLLREL VRKQGGKDWG VIATAFPGRT  60
DKSCRLRWRQ HLDPSVDVAL PFSAGEDRKI VELHRVHGNR WATIAAFLPG RSDNAIKNRW  120
NTHLRKRHAQ DVQQRPSGGL ALGLGGGGGA GQAAGGKLTP VCLQLFPPTQ APPIGENLPG  180
PARSAVPELL KLFPLAPGDL KDNASAAAAM DVGNEAVRAL PELRLSPAAV VFDAMPLQAI  240
RM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-292912710107B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10PF5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g13310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g13310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1376960.0AC137696.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630256.11e-172PREDICTED: transcription factor WER-like
TrEMBLA0A0D3FFY01e-172A0A0D3FFY0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GJC91e-172A0A0E0GJC9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NS471e-172A0A0E0NS47_ORYRU; Uncharacterized protein
TrEMBLA2XEB41e-172A2XEB4_ORYSI; Putative uncharacterized protein
TrEMBLI1P9891e-172I1P989_ORYGL; Uncharacterized protein
TrEMBLQ10PF51e-172Q10PF5_ORYSJ; Myb-like DNA-binding domain containing protein, expressed
STRINGLOC_Os03g13310.11e-172(Oryza sativa Japonica Group)
STRINGBGIOSGA012194-PA1e-172(Oryza sativa Indica Group)
STRINGORGLA03G0093500.11e-172(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-34myb domain protein 109