PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g12490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 764aa    MW: 86538.2 Da    PI: 7.9751
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g12490.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.13.4e-19151230290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       fYn YA+ +GF +r+sk++++ + g   +++f+C +eg++++ +          + tr+gCka++++++++ ++kw+v+ +++eHnHe+ 
  LOC_Os03g12490.1 151 FYNLYARFTGFGIRRSKNRYK-DGGVKSMQEFCCIREGRDNSVT---------GPPTRIGCKAMVRLNRSSeSQKWRVSAFVSEHNHEMK 230
                       9***************99987.889999**********988754.........569**************99***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-13151229IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.237490526IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-5491522IPR007527Zinc finger, SWIM-type
SMARTSM005755.4E-5501528IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MSSARSVASP SAARVGGGSS APDVEQQKSV AAVGVSSPVS SSKHHHMAKA EDGTITINGD  60
KQQNPAADRG SYQNPCWTET IFAKIAMEEE GWPEKGGEDH SGQPMDVVPL ERIVVEGEED  120
SDLLPISLSD PAILLPKIGQ TFNEDSDGYA FYNLYARFTG FGIRRSKNRY KDGGVKSMQE  180
FCCIREGRDN SVTGPPTRIG CKAMVRLNRS SESQKWRVSA FVSEHNHEMK RDLQHTKHFR  240
SHNFIDEGTK RNIKEMVDNG MTPTAMYGLL SDNCHQMEVA IKAVWPETIH RVCKWHVLKN  300
AKENLGNIYS KRSSFKQEFH RVLNEPQTEA EFDKAWSDLM EQYNLESSVY LRRMWDMKKK  360
WAPAYFREFF FARMSTTQRS ESMNHVLKKY VKPSSSLHGF AKRYENFYND RIEAEDAEEH  420
DTYNEKVSTL TSSPIEKHAS RVYTRGAFSR FKEQFKLSFS FMVYHTSDQH VLQLVHIGDD  480
TLQSWGSKEF KVQVDLTEQD LSCGCKLFEH LGIICSHIIR VMVQYGFTEI PKKYILKRWT  540
KDARDSIPKH LEESYLKDKE AASSRTYRNT LLHKSALDMV RLGGTSSETY EKTVEVLTKL  600
IGELQVMCTS QVVNNKEIHC GDRTIGKKPT GVQLDDSVDS SDSEPGMSDE FCVADEDGIG  660
QDVSAGEDSV DVDMTDVNEE DILPPEVRRS RGRPRSTRLM SKGETSSKAK KKKASESTSK  720
DESKNHAKGK KESTKQIRYC KQCGGHGHYK STCGRKSSYE RRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.123040.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10PQ2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g12490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g12490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072260.0AC107226.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0081P02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ10PQ20.0Q10PQ2_ORYSJ; Transposon protein, putative, unclassified
STRINGLOC_Os03g12490.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1594035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-55FAR1-related sequence 5