PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g12370.1
Common NameHSF09, HSF8, HSFA9, LOC4332113, Os03g0224700, OsJ_009601, OSJNBa0081P02.6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 411aa    MW: 45465.6 Da    PI: 4.8196
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g12370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.8e-32511422103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++++isw e g sfv++d++ f++  L+++Fkhsnf+SF+RQLn+YgF+kv+ ++         we++++ F  g+k+ll
  LOC_Os03g12370.1  51 FLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFER-DLHRHFKHSNFTSFIRQLNTYGFRKVHPDR---------WEWANEGFIMGQKHLL 133
                       9************************************.8**************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++ikr+k++
  LOC_Os03g12370.1 134 KTIKRRKKS 142
                       ******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-3343134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3047139IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-5047139IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-2851139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-165174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-1688100IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434089113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-16101113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGSKKRSPQH PAAAAPPPAV GGGGGGEVSG DGGASTANGP VVPKPSEVAP FLTKVYDMVS  60
DPATDNVISW AEGGGSFVIW DSHAFERDLH RHFKHSNFTS FIRQLNTYGF RKVHPDRWEW  120
ANEGFIMGQK HLLKTIKRRK KSSQESPSEI QKAPVKTAPG TENIEIGKYG GLEKEVETLK  180
RDKALLMQQL VDLRHYQQTS NLEVQNLIER LQVMEQNQQQ MMALLAIVVQ NPSFLNQLVQ  240
QQQQQRRSNW WSPDGSKKRR FHALEQGPVT DQETSGRGAH IVEYLPPVPE TSGQVNPVEG  300
AICSANSQPV PSPAVATPMD MQTSNVADTL GSSEEPFADN STLHEWDDND MQLLFDDNLD  360
PILPPFENDG QMGPPLSVQD YDFPQLEQDC LMEAQYNSNN PQYADVITEA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D3e-223213910129Heat shock factor protein 1
5d5v_B3e-223213910129Heat shock factor protein 1
5d5u_B3e-223213910129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138LKTIKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.400200.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329825940.0
Expression AtlasQ10PR4-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g12370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g12370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0725710.0AK072571.1 Oryza sativa Japonica Group cDNA clone:J023131M03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633341.10.0PREDICTED: heat stress transcription factor A-9
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLI1P9250.0I1P925_ORYGL; Uncharacterized protein
STRINGLOC_Os03g12370.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1278345
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.23e-72heat shock factor 3
Publications ? help Back to Top
  1. Ye R,Yao QH,Xu ZH,Xue HW
    Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development.
    Plant J., 2004. 38(2): p. 348-57
    [PMID:15078336]
  2. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  3. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]