PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g08490.1
Common NameLOC4331847, OSJNBa0032G08.13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 322aa    MW: 33806.4 Da    PI: 4.7462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g08490.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1891141155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y GVr+++ +g+W+AeIrdp+e     r++lg+f tae Aa a++aa++ l+g
  LOC_Os03g08490.1  91 SKYWGVRRRP-WGKWAAEIRDPVE---GVRVWLGTFATAEAAAHAYDAAARDLRG 141
                       79********.**********866...3************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1191141IPR001471AP2/ERF domain
CDDcd000185.10E-1491148No hitNo description
SuperFamilySSF541716.54E-2291150IPR016177DNA-binding domain
SMARTSM003804.7E-3392155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3092151IPR001471AP2/ERF domain
PROSITE profilePS5103223.47292149IPR001471AP2/ERF domain
PRINTSPR003673.1E-993104IPR001471AP2/ERF domain
PRINTSPR003673.1E-9115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MCGGAILANI IPATPPRPAT AAHVWPGGDG EKRRKVGGGG CDDDFEAAFE RFGREDSEME  60
EEEVEEVVVG KKAAVRRRRA TPAAGRRARP SKYWGVRRRP WGKWAAEIRD PVEGVRVWLG  120
TFATAEAAAH AYDAAARDLR GATAKLNFPS SSSSTAATPR PRKCRPTTAT ATPKATTPNV  180
VVVVNLVDKE AEVSESSGAS SSALPDFSWQ GMSASSDDDA AAQQALLDAA GGAKKRPRSE  240
PHVTSDDEVL PASFDSDNNT AAAGLLPLDD PFLFGDQFGD LNGGAFASLM DGLFAAGEAN  300
VAGESVGLWS FGDDFLNASY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1888154168ATERF1
3gcc_A5e-1888154168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.230280.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329921960.0
Expression AtlasQ94HF5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g08490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g08490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0796330.0AC079633.9 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630586.10.0PREDICTED: ethylene-responsive transcription factor ERF073
TrEMBLQ94HF50.0Q94HF5_ORYSJ; AP2 domain containing protein, expressed
STRINGLOC_Os03g08490.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-18ERF family protein