PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g08470.1
Common NameLOC4331845, Os03g0183000, OSJNBa0032G08.15, OSNPB_030183000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 335aa    MW: 35760.5 Da    PI: 6.0764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g08470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19110159255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++G+r+++ +g+W+AeIrdp     + +r++lg+f t+eeAa+a++  +++l+g
  LOC_Os03g08470.1 110 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 159
                       69*******.**********72....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-32109168IPR001471AP2/ERF domain
SMARTSM003805.2E-38110173IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-22110168IPR016177DNA-binding domain
CDDcd000181.37E-28110169No hitNo description
PROSITE profilePS5103223.446110167IPR001471AP2/ERF domain
PfamPF008473.0E-12110159IPR001471AP2/ERF domain
PRINTSPR003674.4E-11111122IPR001471AP2/ERF domain
PRINTSPR003674.4E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MCGGAILAEF IPAPSRAAAA TKRVTASHLW PAGSKNAARG KSKSKRQQRS FADVDDFEAA  60
FEQFDDDSDF DDAEEEDEGH FVFASKSRVV AGHDGRAAAR AASKKKRGRH FRGIRQRPWG  120
KWAAEIRDPH KGTRVWLGTF NTPEEAARAY DVEARRLRGS KAKVNFPATP AAARPRRGNT  180
RATAVPPPAT APAAAPPRGL KREFSPPAET ALPFFTNGFV DLTTAAAPPP AMMMTSSFTD  240
SVATSESGGS PAKKARSDDV DSSEGSVGGG SDTLGFTDEL EFDPFMLFQL PYSDGYESID  300
SLFAAGDANS ANTDMNAGVN LWSFDDFPID GALF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A5e-22107167263ATERF1
2gcc_A5e-22107167263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.64580.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172286000.0
Expression AtlasQ10QU5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g08470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g08470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8372580.0EU837258.1 Oryza sativa Japonica Group clone KCS050F04 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630585.10.0PREDICTED: ethylene-responsive transcription factor ERF073
TrEMBLA0A0D3FEN50.0A0A0D3FEN5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NQL80.0A0A0E0NQL8_ORYRU; Uncharacterized protein
TrEMBLQ10QU50.0Q10QU5_ORYSJ; AP2 domain containing protein
STRINGLOC_Os03g08470.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-27ERF family protein