PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g05500.1
Common NameCRLL1, LOC4331627, Os03g0149000, OSNPB_030149000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 186aa    MW: 19631 Da    PI: 6.4849
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g05500.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.31.2e-38131131100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkCa++Cv+apyf+ae+ +++fa++hk+FGasn  kll+++ + +r++++++++yeA+ar+rdPvyG+v++i++lqqql++l++
  LOC_Os03g05500.1  13 PCGACKFLRRKCAAECVFAPYFCAEDgAAQFAAIHKVFGASNAAKLLQQVAPGDRSEVAATVTYEAQARLRDPVYGCVAHIFALQQQLATLQV 105
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkee 100
                       ++a++k++
  LOC_Os03g05500.1 106 QVAQAKTQ 113
                       ***99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.79112114IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-3713111IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MASSGVGGVP GSPCGACKFL RRKCAAECVF APYFCAEDGA AQFAAIHKVF GASNAAKLLQ  60
QVAPGDRSEV AATVTYEAQA RLRDPVYGCV AHIFALQQQL ATLQVQVAQA KTQVAQTLAA  120
AGMLTAGNPL LQHQQQQQQA WQIEHESTMT STQSSGCYSA PRSDGSTSLQ DMYCFGEQEE  180
GSYSR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.813190.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5KQR7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g05500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g05500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2002350.0AB200235.1 Oryza sativa Japonica Group CRLL1 mRNA for LOB domain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632118.11e-134PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB73e-53LBD16_ARATH; LOB domain-containing protein 16
TrEMBLI1P7L21e-134I1P7L2_ORYGL; Uncharacterized protein
TrEMBLQ5KQR71e-134Q5KQR7_ORYSJ; Expressed protein
STRINGLOC_Os03g05500.11e-133(Oryza sativa Japonica Group)
STRINGORGLA03G0035800.11e-133(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
MonocotsOGMP102623344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-37lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Inukai Y, et al.
    Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling.
    Plant Cell, 2005. 17(5): p. 1387-96
    [PMID:15829602]