PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g57790.1
Common NameLOC107277956, OJ1063_D06.5, OJ1136_C04.13, Os02g0823900, OSNPB_020823900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 328aa    MW: 34027.6 Da    PI: 8.4912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g57790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055117139123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+k+F++   L  H  +H
  LOC_Os02g57790.1 117 YECKTCNKCFPTFQALGGHRASH 139
                       99**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-8116139No hitNo description
PfamPF139121.9E-11116141IPR007087Zinc finger, C2H2
SMARTSM003550.094117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097117144IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-8210237No hitNo description
PfamPF139129.1E-13214238IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349215237IPR007087Zinc finger, C2H2
SMARTSM003550.026215237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSVEDKHAGV VKRKRTKRPR HHAAPASSSE STTTEEEDMA HCLILLAQGA AVVDSKPSTP  60
APPPPPPAQP PVLAAPAPAP PPPQPPVVVV KSERYTSRKY TEAATTADGV RAGFYVYECK  120
TCNKCFPTFQ ALGGHRASHK KPRLPGADDD NVNNVTNTNA IVVKSKPPLT TTTTPSAPSP  180
PPPQADAVVV PDVTTVLSLN NVAAAGSIIN KLRVHECSIC GAEFGSGQAL GGHMRRHRPL  240
HAPPERAATT AATTAATATA PDTKKEGSTS INLELDLNLP APSDEESVSP PPPPPPPVLL  300
ALGGQFNDGK KPILQLTASA ALVGCHY*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6K9W9
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g57790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g57790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0040260.0AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0039890.0AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623775.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLQ6K9W90.0Q6K9W9_ORYSJ; Os02g0823900 protein
STRINGLOC_Os02g57790.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP23501035
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-28C2H2 family protein