PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g57490.1
Common NameLOC4331170, OJ1202_E07.33, Os02g0820500, OSNPB_020820500, P0474F11.14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 217aa    MW: 22457.6 Da    PI: 7.9346
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g57490.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.93.5e-38211211100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrr+C+++Cv+apyf +eq +++fa++hk+FGasn +kll++lp  +r +a+ +++yeA+ar+rdPvyG+v+ i++lqqq++ l+a
  LOC_Os02g57490.1  21 PCGACKFLRRRCVPECVFAPYFSSEQgAARFAAIHKVFGASNASKLLSHLPVADRCEAVVTITYEAQARLRDPVYGCVAQIFALQQQVAILQA 113
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkee 100
                       +l +++++
  LOC_Os02g57490.1 114 QLMQARAQ 121
                       **999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.95120122IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3721119IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAGATAAGAA AAAAGTGAGS PCGACKFLRR RCVPECVFAP YFSSEQGAAR FAAIHKVFGA  60
SNASKLLSHL PVADRCEAVV TITYEAQARL RDPVYGCVAQ IFALQQQVAI LQAQLMQARA  120
QLACGIQSSS HSPVSWPDSG SISALLRQDM ARRPPGGALD DCFGGGGALL PELMAAGFKD  180
DVAAVQMQQH CSKAVDAGEL QYLAQAMMRS TSNYSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.73420.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329742050.0
Expression AtlasQ6K713-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g57490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g57490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641870.0AK064187.1 Oryza sativa Japonica Group cDNA clone:002-104-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626197.11e-156PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB72e-60LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0D9Z0981e-156A0A0D9Z098_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GEZ61e-156A0A0E0GEZ6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NMY51e-156A0A0E0NMY5_ORYRU; Uncharacterized protein
TrEMBLA2XB421e-156A2XB42_ORYSI; Putative uncharacterized protein
TrEMBLI1P5M21e-156I1P5M2_ORYGL; Uncharacterized protein
TrEMBLQ6K7131e-156Q6K713_ORYSJ; LOB domain protein-like
STRINGBGIOSGA005344-PA1e-155(Oryza sativa Indica Group)
STRINGLOC_Os02g57490.11e-155(Oryza sativa Japonica Group)
STRINGORGLA02G0327800.11e-155(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
MonocotsOGMP105993443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.16e-45lateral organ boundaries-domain 16