PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g56600.1
Common NameLOC4331098, OJ1116_E04.11, Os02g0810900, OsJ_08821, OSNPB_020810900, P0016F11.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 332aa    MW: 36318.7 Da    PI: 7.4375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g56600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1592e-49101541128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                       lppGfrF P+deelv++yL++kv +++                 ++ evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksg
  LOC_Os02g56600.1  10 LPPGFRFYPSDEELVCHYLHNKVVNQHrfagvggA---AaagggTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSG 99 
                       79********************9999966665551...0445547***************87788999************************* PP

               NAM  82 yWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       yWkatgkd+ +++         + + vg++ktLvfy+grap+g+kt+Wvmhe+r+
  LOC_Os02g56600.1 100 YWKATGKDRVIHNPklhaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 154
                       ************98777776655556***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-587173IPR003441NAC domain
PROSITE profilePS5100555.62410173IPR003441NAC domain
PfamPF023651.2E-2711154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNQHRFAG VGGAAAAGGG TMVEVDLHTH  60
EPWELPDVAK LSTNEWYFFS FRDRKYATGL RTNRATKSGY WKATGKDRVI HNPKLHAAAH  120
RRASIVGMRK TLVFYRGRAP NGVKTNWVMH EFRMENPHTP PKEDWVLCRV FYKKKAETET  180
ESSYSMENEQ EAVIAMARSA AAIKAGGCYS NSSSSHDPAA AGHHSPPPFP ASLAACSSSH  240
HYSSHPPPPP DHHHHHHMPV TGGGGGSLNE FIPTTSMALY SSIFDFSQHL DGGAVAASAS  300
AAGSRVDGGE QCGLMELGLE EHYNYNGLMP M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-4611794170NAC domain-containing protein 19
4dul_A1e-4611794170NAC domain-containing protein 19
1ut7_B1e-4611794170NO APICAL MERISTEM PROTEIN
1ut7_A1e-4611794170NO APICAL MERISTEM PROTEIN
1ut4_B1e-4611794170NO APICAL MERISTEM PROTEIN
1ut4_A1e-4611794170NO APICAL MERISTEM PROTEIN
3swp_D1e-4611797173NAC domain-containing protein 19
3swp_C1e-4611797173NAC domain-containing protein 19
3swp_B1e-4611797173NAC domain-containing protein 19
3swp_A1e-4611797173NAC domain-containing protein 19
3swm_D1e-4611797173NAC domain-containing protein 19
3swm_C1e-4611797173NAC domain-containing protein 19
3swm_B1e-4611797173NAC domain-containing protein 19
3swm_A1e-4611797173NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.511200.0flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329810050.0
Expression AtlasQ6K5X2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g56600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g56600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0609760.0AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623778.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1
SwissprotQ84TE64e-61NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0NML90.0A0A0E0NML9_ORYRU; Uncharacterized protein
TrEMBLB8AEI00.0B8AEI0_ORYSI; Putative uncharacterized protein
TrEMBLQ6K5X20.0Q6K5X2_ORYSJ; Os02g0810900 protein
STRINGBGIOSGA009257-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os02g56600.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-77NAC domain containing protein 74