PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g56140.1
Common NameOsJ_08778
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 281aa    MW: 31494.8 Da    PI: 7.0356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g56140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-1658104455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  LOC_Os02g56140.1  58 VHNLSEKRRRSRINEKMKALQSLIPNS-----SKTDKASMLDDAIEYLKQLQ 104
                       6*************************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-2051115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-2052114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.12754103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-1557108No hitNo description
PfamPF000104.9E-1458104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1960109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MMDGRGSQEE EHLDLIMRHH ASMGLDRCES EEALGSSESE QPTRPARPRG KRSRAAEVHN  60
LSEKRRRSRI NEKMKALQSL IPNSSKTDKA SMLDDAIEYL KQLQLQVQML SMRNGLYLPP  120
VNLSGAPEHL PIPQMSAALD QNSAKASDPS VVLQPVNQTS GALLPFELAS QHKPLFLPGV  180
PNATALEPRF LVESSRSNLQ SLRFTEPAEM IYPDEMMLKH RLTSASESTI VPGTDEKSVR  240
QNTYMMNADR FDRYALSKDQ LQHIMPKNTE SVLDMPHLQR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.582521e-174callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3ACF9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g56140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g56140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0691581e-171AC069158.6 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence.
GenBankAP0149581e-171AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0042401e-171AP004240.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1548_F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627243.10.0PREDICTED: transcription factor SPATULA isoform X1
RefseqXP_015627242.10.0PREDICTED: transcription factor SPATULA isoform X1
TrEMBLA0A0P0VQW60.0A0A0P0VQW6_ORYSJ; Os02g0805250 protein
TrEMBLA3ACF90.0A3ACF9_ORYSJ; Uncharacterized protein
STRINGBGIOSGA005408-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os02g56140.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-35bHLH family protein