PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g54160.1
Common NameEREBP1, OJ1311_D08.9, Os02g0782700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 366aa    MW: 40141.5 Da    PI: 4.644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g54160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18119168255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++a +++++g
  LOC_Os02g54160.1 119 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSAEEAARAYDAEARRIRG 168
                       69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.9E-36119182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-31119177IPR001471AP2/ERF domain
CDDcd000182.07E-31119178No hitNo description
SuperFamilySSF541714.05E-21119176IPR016177DNA-binding domain
PROSITE profilePS5103223.459119176IPR001471AP2/ERF domain
PfamPF008474.6E-11120168IPR001471AP2/ERF domain
PRINTSPR003671.3E-10120131IPR001471AP2/ERF domain
PRINTSPR003671.3E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MCGGAIIHHL KGHPEGSRRA TEGLLWPEKK KPRWGGGGRR HFGGFVEEDD EDFEADFEEF  60
EVDSGDSDLE LGEEDDDDVV EIKPAAFKRA LSRDNLSTIT TAGFDGPAAK SAKRKRKNQF  120
RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN SAEEAARAYD AEARRIRGKK AKVNFPEAPT  180
TAQKRRAGST TAKAPKSSVE QKPTVKPAFN NLANANAFVY PSANFTSNKP FVQPDNMPFV  240
PAMNSAAPIE DPIINSDQGS NSFGCSDFGW ENDTKTPDIT SIAPISTIAE VDESAFIKSS  300
TNPMVPPVME NSAVDLPDLE PYMRFLLDDG AGDSIDSLLN LDGSQDVVSN MDLWSFDDMP  360
VSDFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-19118176160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-19119176563ATERF1
3gcc_A4e-19119176563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.575520.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329889920.0
Expression AtlasQ6K7E6-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g54160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g54160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8372550.0EU837255.1 Oryza sativa Japonica Group clone KCS057H03 EREBP transcription factor mRNA, complete cds.
GenBankAK1037830.0AK103783.1 Oryza sativa Japonica Group cDNA clone:J033145H23, full insert sequence.
GenBankAK0640270.0AK064027.1 Oryza sativa Japonica Group cDNA clone:001-125-B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625463.10.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor 1-like
SwissprotQ6K7E60.0ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0D3FBA60.0A0A0D3FBA6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NLT20.0A0A0E0NLT2_ORYRU; Uncharacterized protein
TrEMBLI1P4X10.0I1P4X1_ORYGL; Uncharacterized protein
TrEMBLQ0DX050.0Q0DX05_ORYSJ; EREBP transcription factor
STRINGLOC_Os02g54160.10.0(Oryza sativa Japonica Group)
STRINGORGLA02G0302700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-36related to AP2 12
Publications ? help Back to Top
  1. Cheong YH, et al.
    BWMK1, a rice mitogen-activated protein kinase, locates in the nucleus and mediates pathogenesis-related gene expression by activation of a transcription factor.
    Plant Physiol., 2003. 132(4): p. 1961-72
    [PMID:12913152]