PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g53100.1
Common NameWRKY32
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 605aa    MW: 62940.3 Da    PI: 4.7995
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g53100.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30340399159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  LOC_Os02g53100.1 340 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 399
                       58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31325401IPR003657WRKY domain
SuperFamilySSF1182903.27E-27333401IPR003657WRKY domain
PROSITE profilePS5081128.529335401IPR003657WRKY domain
SMARTSM007741.4E-37340400IPR003657WRKY domain
PfamPF031061.1E-26341399IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MSSKKKRAAI DLSLEAERRR PEERGGGSDR EASDGAAAAA EEDGDVKQRE GPKEETGGEE  60
EKVVEVVVDQ GEDGSNEEIK YRTQQAEMIE EDKQPAAAAN VDDDGGDSDG VGASAEEKHM  120
VTEATGGEGD DGGDSRTPMA QDELSEMQEE MERMKEENRM LRRVVDKTVR DYYELQMKLA  180
AYQQQPAAAD EPKETEVFLS LGATAAASAG CGGGFPEAKS KEQAAWRRRS VGSDDSDCGK  240
EDLGLSLSLG ASSSYDDDQK AVEARPHDVD GAAAAAMIGG DGSRPAPRGY ALLESSKVQG  300
GAAPAAGELA AAGGITSQSV NPANRKTRVS VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP  360
RAYYRCTVAP GCPVRKQVQR CLEDMSILVT TYEGTHNHPL PVGATAMAST TSAAATFMLL  420
SSTTSSSSVS DASAAPSSSY LSPYLLNSAS PLLMPGATGG GGGMQHLNLF GNSPSSSSLL  480
APQAPGSSKY PWSPNHPPLA GAGGNKRPFW SAGGDGDKPA PAALAENVGA VMSDPNKFSA  540
AIAAAINNFM GKDGESSSGK SSTFAWTRSM DCTATPASVP APARPRREPV HGPGPRRGEQ  600
AAKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22327403176WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154489400.0
Expression AtlasQ6IEP9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g53100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g53100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0040800.0AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBankAP0040580.0AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623937.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLQ6IEP90.0Q6IEP9_ORYSJ; WRKY transcription factor 32
STRINGLOC_Os02g53100.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.16e-50WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]