PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g52950.1
Common NameLOC4330853, Os02g0768700, OSNPB_020768700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 295aa    MW: 31156.3 Da    PI: 10.5716
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g52950.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57343.39.9e-1494182397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       +q+lw + De++lL G   f+a+ g  p   d+ a+++ +++s+s ++ +  +  K++rLK K+ +           + + +h++ + +l+ +
  LOC_Os02g52950.1  94 VQKLWGDADEVALLAGAAAFRARAGHVPRLpDMGALFDSIRGSLSPHIDQAKVYYKLKRLKGKYLHAAPG-------ASAGPHERRVRDLCAS 179
                       79************************77766**********************************99888.......6788999999999999 PP

            DUF573  95 iWg 97 
                       +Wg
  LOC_Os02g52950.1 180 VWG 182
                       997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.4E-1495182IPR007592Protein of unknown function DUF573
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPSKRPSQSA MDAGAAPASP SPPRSSKKRS SRPKPRAGDA ARHPAPNPSP PPAAAAPASS  60
RSRERERKRR QRGAFADPAA VTAPAAGGQH GGAVQKLWGD ADEVALLAGA AAFRARAGHV  120
PRLPDMGALF DSIRGSLSPH IDQAKVYYKL KRLKGKYLHA APGASAGPHE RRVRDLCASV  180
WGADLEPLAE GDDERAAAAA AAAAADQPRT VPDAAAMLPV LTEMLDEYWK TDGRALSSVS  240
LAKGLSLLGT EEARFIEGKW RRQLDSEIQT QMRRHDLAKE VYALLMDAIK ALGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570ERKRRQ
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567658490.0
Expression AtlasA0A0P0VQF4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g52950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g52950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0041250.0AP004125.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1767_D02.
GenBankAP0040800.0AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626514.10.0PREDICTED: myristoylated alanine-rich C-kinase substrate
RefseqXP_015626513.10.0PREDICTED: myristoylated alanine-rich C-kinase substrate
TrEMBLA0A0P0VQF40.0A0A0P0VQF4_ORYSJ; Os02g0768700 protein
TrEMBLQ6ZGJ60.0Q6ZGJ6_ORYSJ; Uncharacterized protein
STRINGLOC_Os02g52950.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1306744
MonocotsOGMP26822763