PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g52670.1
Common NameLOC4330829, Os02g0764700, OsJ_08495, OSNPB_020764700, P0539D10.19
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 243aa    MW: 25789 Da    PI: 6.9863
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g52670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-20120170155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GVr+++ +g+W+AeIrdp+    r    +lg+f+tae+Aa+a++ a+++++g
  LOC_Os02g52670.1 120 SRYRGVRRRP-WGKWAAEIRDPR----RaVCKWLGTFDTAEDAARAYDVAALEFRG 170
                       79********.**********82....48*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-12120170IPR001471AP2/ERF domain
CDDcd000181.92E-29120180No hitNo description
SuperFamilySSF541719.81E-23120180IPR016177DNA-binding domain
SMARTSM003802.9E-35121184IPR001471AP2/ERF domain
PROSITE profilePS5103224.895121178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-30121179IPR001471AP2/ERF domain
PRINTSPR003671.5E-13122133IPR001471AP2/ERF domain
PRINTSPR003671.5E-13160180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVPRVERGGG GFHLPNSERE DSLFIRALIS VVSGDTTVPT LLPEPTMATV VAGAATCARC  60
GVDGCIGVDC EVVVLAAAAG SSCSDEEDEG ECTTGAVASG GVTGGVGKRR PRRRSGGEGS  120
RYRGVRRRPW GKWAAEIRDP RRAVCKWLGT FDTAEDAARA YDVAALEFRG QRAKLNFPAS  180
TAAQQPRPLL HHNLRENCGS NASSPVHAPE HARTAAAAKD QEIWDGLREI MMLDDGSFWS  240
MP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20118178263ATERF1
3gcc_A2e-20118178263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113RRPRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.549440.0panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923550.0
Expression AtlasQ6Z7P9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g52670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g52670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0048170.0AP004817.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0539D10.
GenBankAK1071460.0AK107146.1 Oryza sativa Japonica Group cDNA clone:002-124-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624274.11e-177PREDICTED: ethylene-responsive transcription factor ERF109
TrEMBLQ6Z7P91e-177Q6Z7P9_ORYSJ; AP2 domain-containing transcription factor-like
STRINGLOC_Os02g52670.11e-176(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-15ERF family protein