PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g51670.1
Common NameLOC4330752, OJ1288_G09.10, Os02g0752800, OSNPB_020752800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 339aa    MW: 36300.5 Da    PI: 8.098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g51670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20168217255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  LOC_Os02g51670.1 168 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 217
                       59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.91E-31167225No hitNo description
Gene3DG3DSA:3.30.730.102.8E-32168226IPR001471AP2/ERF domain
SMARTSM003804.4E-38168231IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22168226IPR016177DNA-binding domain
PROSITE profilePS5103223.077168225IPR001471AP2/ERF domain
PRINTSPR003675.8E-11169180IPR001471AP2/ERF domain
PfamPF008471.9E-13169217IPR001471AP2/ERF domain
PRINTSPR003675.8E-11191207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAAAIDMYKY NTSTHQIASS DQELMKALEP FIRSASSSSA SSPCHHYYSS SPSMSQDSYM  60
PTPSYPTSSI TTAAATTTSS FSQLPPLYSS QYHAASPAAS ATNGPMGLTH LGPAQIQQIQ  120
AQFLAQQQQQ RALAGAFLRP RGQPMKQSGS PPRAGPFAAV AGAAQSKLYR GVRQRHWGKW  180
VAEIRLPKNR TRLWLGTFDT AEDAALAYDK AAFRLRGDLA RLNFPTLRRG GAHLAGPLHA  240
SVDAKLTAIC QSLATSSSKN TPAESAASAA EPESPKCSAS TEGEDSVSAG SPPPPTPLSP  300
PVPEMEKLDF TEAPWDESET FHLRKYPSWE IDWDSILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21164225163ATERF1
3gcc_A1e-21164225163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.281170.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZGQ0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g51670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g51670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0041190.0AP004119.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1288_G09.
GenBankAK1059910.0AK105991.1 Oryza sativa Japonica Group cDNA clone:001-205-H01, full insert sequence.
GenBankAK1058770.0AK105877.1 Oryza sativa Japonica Group cDNA clone:001-204-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625871.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0E0NL300.0A0A0E0NL30_ORYRU; Uncharacterized protein
TrEMBLQ6ZGQ00.0Q6ZGQ0_ORYSJ; Os02g0752800 protein
STRINGLOC_Os02g51670.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-48related to AP2 4