PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g51280.1
Common NameLOC4330722, Os02g0747400, OSJNBa0078N11.17, OSJNBb0024K03.29, OSNPB_020747400, TCP6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 411aa    MW: 41249.4 Da    PI: 9.8129
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g51280.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1302.3e-40662421137
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                       aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++    
  LOC_Os02g51280.1  66 AAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSAPahlr 158
                       689*******************************************************************99987888888888666668888 PP

               TCP  89 ................................kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkln 137
                                                       ++++s  +   + +s +  l+++ + +a a a   +r+ r++++m+++++++
  LOC_Os02g51280.1 159 alpspaaaarfgsradawdrvvslgfpsegpaSSSSSPSPLLLNFHSGSVGLDVQPSPSAAAAAAdlSRKrRWEQEMQQQQQQQ 242
                       899999999999999999999999999999964444444888888888888888885555444444666667777777777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.1E-4472242IPR005333Transcription factor, TCP
PROSITE profilePS5136927.86173127IPR017887Transcription factor TCP subgroup
Gene3DG3DSA:2.60.120.103.0E-4233256IPR014710RmlC-like jelly roll fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MTMDVAGDAG GGRRPNFPLQ LLEKKEEQPC SSSAAGGGTG PSSAGGNGNN GSGPGGAGGE  60
MQLRKAAPKR SSTKDRHTKV EGRGRRIRMP ALCAARVFQL TRELGHKTDG ETIEWLLQQA  120
EPAVIAATGT GTIPANFTSL NISLRSSGSS LSAPAHLRAL PSPAAAARFG SRADAWDRVV  180
SLGFPSEGPA SSSSSPSPLL LNFHSGSVGL DVQPSPSAAA AAADLSRKRR WEQEMQQQQQ  240
QQQQQQQQQQ QQYQQQMAGY TQSQMPGTVW MVPSNSTQGG GPSGGGGGGG GGSGESIWTF  300
PQMSSAAAAA AVYRGSVPSG LHFMNFPAPM ALLPGQQLGL GPVGGGGGGG GGGEGHMGIL  360
AALNAYRTQA ATDAAGQQGG GGGGGGSSQQ QHGGGGGGGE RHQSISTSDS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282292SGGGGGGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.479480.0flower| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154486700.0
Expression AtlasQ6YUX6-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g51280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g51280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0058480.0AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBankAP0057330.0AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624016.10.0PREDICTED: transcription factor TCP14
SwissprotQ93Z009e-58TCP14_ARATH; Transcription factor TCP14
TrEMBLQ6YUX60.0Q6YUX6_ORYSJ; Os02g0747400 protein
STRINGLOC_Os02g51280.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26991230
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-44TCP family protein