PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g49230.3
Common NameOsJ_08199
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CO-like
Protein Properties Length: 408aa    MW: 44327.2 Da    PI: 4.9028
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g49230.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.4e-06445540
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       C+ + e++   +C+++   lC +C  + H+       Ht++
  LOC_Os02g49230.3  4 LCDFCREQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                      7*****************************657888889876 PP

2zf-B_box22.13.1e-074789541
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                       C+++  +++   C + ++ lC++C  ++H g       H++++
  LOC_Os02g49230.3 47 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 89
                      7*****************************.5588889998876 PP

3CCT64.53.2e-22350393144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  LOC_Os02g49230.3 350 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393
                       899**************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.8E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.31147IPR000315B-box-type zinc finger
CDDcd000212.32E-7447No hitNo description
PROSITE profilePS501199.0584390IPR000315B-box-type zinc finger
CDDcd000211.54E-54790No hitNo description
SMARTSM003360.244890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.408350392IPR010402CCT domain
PfamPF062037.0E-17350392IPR010402CCT domain
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.34000.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166324750.0
Expression AtlasB9F2G3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g49230.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g49230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018880.0AB001888.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:S3574.
GenBankAK0716300.0AK071630.1 Oryza sativa Japonica Group cDNA clone:J023105D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627428.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X1
RefseqXP_015627427.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-127COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLB9F2G30.0B9F2G3_ORYSJ; Uncharacterized protein
STRINGLOC_Os02g49230.20.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.47e-93CONSTANS-like 9