PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g49230.3
Common NameOsJ_08199
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CO-like
Protein Properties Length: 408aa    MW: 44327.2 Da    PI: 4.9028
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g49230.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.4e-06445540
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       C+ + e++   +C+++   lC +C  + H+       Ht++
  LOC_Os02g49230.3  4 LCDFCREQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                      7*****************************657888889876 PP

2zf-B_box22.13.1e-074789541
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                       C+++  +++   C + ++ lC++C  ++H g       H++++
  LOC_Os02g49230.3 47 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 89
                      7*****************************.5588889998876 PP

3CCT64.53.2e-22350393144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  LOC_Os02g49230.3 350 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393
                       899**************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.8E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.31147IPR000315B-box-type zinc finger
CDDcd000212.32E-7447No hitNo description
PROSITE profilePS501199.0584390IPR000315B-box-type zinc finger
CDDcd000211.54E-54790No hitNo description
SMARTSM003360.244890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.408350392IPR010402CCT domain
PfamPF062037.0E-17350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDALCDFCRE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVGQPAAVRC  60
LEENTSLCQN CDWNGHGAAS SAAGHKRQTI NCYSGCPSSA ELSRIWSFSM DIPTVAAEPN  120
CEEGINMMSI NDNDVNNHCG APEDGRLLDI ASTALMSDLP TGDKFKPLIG SSSGDGMNLL  180
PLNSDQPAEP VSTTPKAPCV TDKDMFNDGS VYGDFCVDDA DLTFENYEEL FGTSHVQTEQ  240
LFDDAGIDSY FEMKDVPADE SNEQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA  300
ISNISLSFSG LTGESSAGYF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.34000.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166324750.0
Expression AtlasB9F2G3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g49230.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g49230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018880.0AB001888.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:S3574.
GenBankAK0716300.0AK071630.1 Oryza sativa Japonica Group cDNA clone:J023105D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627428.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X1
RefseqXP_015627427.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-127COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLB9F2G30.0B9F2G3_ORYSJ; Uncharacterized protein
STRINGLOC_Os02g49230.20.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.47e-93CONSTANS-like 9