PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g45480.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 342aa    MW: 36315.3 Da    PI: 8.3743
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g45480.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07112133426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++Cr+f++ G C+yG++C++ H+
  LOC_Os02g45480.2 112 RPCRYFLA-GDCSYGEKCRYPHS 133
                       79******.***********887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8262854IPR000571Zinc finger, CCCH-type
SMARTSM003560.572953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6109133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012110134IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4112133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5112133IPR000571Zinc finger, CCCH-type
SMARTSM003207.3E-6139178IPR001680WD40 repeat
SuperFamilySSF509782.05E-36139337IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.1E-34141337IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004009.4E-6143178IPR001680WD40 repeat
PROSITE profilePS5029416.348146341IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.118146187IPR001680WD40 repeat
PRINTSPR003203.7E-5165179IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SMARTSM003204.9218255IPR001680WD40 repeat
PRINTSPR003203.7E-5242256IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0035262299IPR001680WD40 repeat
PfamPF004000.05267299IPR001680WD40 repeat
PROSITE profilePS5008211.244269308IPR001680WD40 repeat
PRINTSPR003203.7E-5286300IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780286300IPR019775WD40 repeat, conserved site
SMARTSM003200.48302339IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDIETDGRFG NKRVHHRLGP ANGAASSSTS GKVCIHWRAG RCNRFPCPYL HSELPEATAK  60
RPSQSGGGGN VWRNPHSGGG GGRGAGGAGG PNKWGRGPGG ADGGPRHKVP DRPCRYFLAG  120
DCSYGEKCRY PHSYSMSDSI TMLTPLQGHE KVVTGIALPA GSDKLYSGSK DGTVRMWDCQ  180
TGQCAGVINM GREIGCMISE GPWLFVGIPD AVKVWNMQTQ AEMNLTGPTG QVYALAVGNE  240
LLFAATQDGR ILAWRFSAAT NGFEPAASLV GHQLAVVSLV VGAMRLYSAS MDKTIRVWDL  300
ATLQCIQTLS DHTGVVMSVL CWDQFLLSCS LDQTIKVSLC P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B7e-16143337172386F-box/WD repeat protein 7
2ovq_B7e-16143337172386F-box/WD repeat protein 7
2ovr_B7e-16143337172386F-box/WD repeat protein 7
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.231230.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329875330.0
Expression AtlasB7ET05-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g45480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g45480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023240.0AK102324.1 Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627227.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLB7ET050.0B7ET05_ORYSJ; cDNA clone:J033090J15, full insert sequence
STRINGLOC_Os02g45480.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-130zinc finger WD40 repeat protein 1