PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g45420.1
Common NameLOC9270349, Os02g0676800, OSJNBb0005A04.9, OSNPB_020676800, P0135D07.36
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 262aa    MW: 26965.8 Da    PI: 5.5747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g45420.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1671119356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g+
  LOC_Os02g45420.1  71 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRGA 119
                       9***9.55.6*********94....36*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-1870126IPR016177DNA-binding domain
SMARTSM003801.1E-2670132IPR001471AP2/ERF domain
PROSITE profilePS5103220.17870126IPR001471AP2/ERF domain
PfamPF008474.4E-971118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2671126IPR001471AP2/ERF domain
CDDcd000183.50E-1771126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MADLTEHPSP TAPPQVQTAG LPAAASPGPA SPHSPSEQGD KTAPGAATAS TMTTASSGEP  60
SPRSSGKHAF YRGIRCRSGK WVSEIREPRK ARRIWLGTYP TAEMAAAAYD VAARALRGAD  120
AVLNFPGATA SRPVPASASP ADIRAAAAAA AAAAAHLERP HGPTGTAYPA TAAAEHHQQQ  180
QQQQYGSGSP AADDVSGYPP MEGGIGNDDF MDEEAIFELP QLLRNMAAGM MMSPPRLSPT  240
TSDVSPEPSE AGESLWSYRD P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1364126163ATERF1
3gcc_A6e-1364126163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.741780.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166384460.0
Expression AtlasQ6EP81-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g45420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g45420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0060600.0AP006060.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0135D07.
GenBankAP0057750.0AP005775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04.
GenBankAK2431460.0AK243146.1 Oryza sativa Japonica Group cDNA, clone: J100032D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624062.10.0PREDICTED: ethylene-responsive transcription factor ERF027
TrEMBLA0A0D3F8U60.0A0A0D3F8U6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NJ630.0A0A0E0NJ63_ORYRU; Uncharacterized protein
TrEMBLQ6EP810.0Q6EP81_ORYSJ; Os02g0676800 protein
STRINGLOC_Os02g45420.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-20ERF family protein