PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g43330.1
Common NameHOX24, LOC4330155, Os02g0649300, P0048B08.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 262aa    MW: 28537.4 Da    PI: 4.606
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g43330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-1865118456
                       -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  LOC_Os02g43330.1  65 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 118
                       458**************8899********************************9 PP

2HD-ZIP_I/II122.42.3e-3963156193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kq+E+dy+aL+++ydal+++ e+L++e+ +L+++++
  LOC_Os02g43330.1  63 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALADQVD 155
                       69*****************9999******************************************************************9997 PP

       HD-ZIP_I/II  93 e 93 
                       e
  LOC_Os02g43330.1 156 E 156
                       6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-1944121IPR009057Homeodomain-like
SuperFamilySSF466891.55E-1752121IPR009057Homeodomain-like
PROSITE profilePS5007117.21659120IPR001356Homeobox domain
SMARTSM003892.9E-1762124IPR001356Homeobox domain
CDDcd000862.39E-1664121No hitNo description
PfamPF000461.5E-1565118IPR001356Homeobox domain
PRINTSPR000316.5E-791100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000316.5E-7100116IPR000047Helix-turn-helix motif
PfamPF021832.0E-15120161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MESDCQFLVA PPQPHMYYDT AAAAVDEAQF LRQMVAAADH HAAAAGRGGG DGDGGGGGGG  60
GGERKRRFTE EQVRSLETTF HARRAKLEPR EKAELARELG LQPRQVAIWF QNKRARWRSK  120
QIEHDYAALR AQYDALHARV ESLRQEKLAL ADQVDELRGK LNERQDQSGS CDGGGAEGDD  180
DDKRNSVMNA SSSGLVEEDY VSCLAVPVVD VSEDGSAACG GSSYEYDHHL DYLGGGQLPD  240
PFCGMPDLWE IWPMVEWNAV A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.492450.0leaf| stem
Os.844620.0leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329737030.0
Expression AtlasQ6H6S3-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g43330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g43330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8475150.0EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
GenBankAK0636850.0AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624138.10.0PREDICTED: homeobox-leucine zipper protein HOX24
SwissprotQ6H6S30.0HOX24_ORYSJ; Homeobox-leucine zipper protein HOX24
TrEMBLB7E8X80.0B7E8X8_ORYSJ; Homeobox leucine zipper protein
STRINGLOC_Os02g43330.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1459844
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-32homeobox 7
Publications ? help Back to Top
  1. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]