PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g42970.1
Common NameLOC107276426, OJ1282_H11.7, Os02g0643600, OSNPB_020643600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 371aa    MW: 41171.1 Da    PI: 6.9409
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g42970.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.87e-5671361129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeelv++yL+kkv++kk++l +vik+vd+yk+ePwdL++  k+   e+++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk
  LOC_Os02g42970.1   7 VPPGFRFHPTDEELVDYYLRKKVASKKIDL-DVIKDVDLYKIEPWDLQEkcKIGMeEQNDWYFFSHKDKKYPTGTRTNRATGAGFWKATGRDK 98 
                       69****************************.9***************952433333556********************************** PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++++ ++ lvg++ktLvfykgrap+g+k+dW+mheyrle
  LOC_Os02g42970.1  99 PIYA-RSCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                       ****.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-615156IPR003441NAC domain
PROSITE profilePS5100560.0357156IPR003441NAC domain
PfamPF023652.5E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKKIDLDVIK DVDLYKIEPW DLQEKCKIGM  60
EEQNDWYFFS HKDKKYPTGT RTNRATGAGF WKATGRDKPI YARSCLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTTPEEGWVV CRVFKKRVAT VRRMADGSPC WFDDHGAVGA  180
FMPDLSSPRQ LLPHHHHHHP GSSAALYHGH HHQQLQQMYG HCKPELEYHH LLPQEAFLQH  240
LPQLESPKPP PPPPAAAAYI GGHLGSSSST ALTTHDDEAS GSAAQQQPPS LEAVYMAGAG  300
VGIGVDASVT DWRLLDKFVA SQLLSKESMS SYGSHPAQVF QAADGGKHEE ALDYASTSAG  360
SGGGEADLWK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-51615714169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6H666
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g42970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g42970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0052910.0AP005291.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1282_H11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622926.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-127NAC7_ARATH; NAC domain-containing protein 7
TrEMBLQ6H6660.0Q6H666_ORYSJ; Os02g0643600 protein
STRINGLOC_Os02g42970.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-93NAC 007