PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g42380.1
Common NameLOC4330080, OJ1581_H09.2, Os02g0635800, OSNPB_020635800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 212aa    MW: 21820.6 Da    PI: 10.8106
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g42380.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.41.5e-35541498110
               TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaaksk 98 
                        +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++  +a s          +++ + +  +k
  LOC_Os02g42380.1  54 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVssSAPST---------SSSHQHTLLGK 137
                       5899999***************************************************999996662211111.........12222222444 PP

               TCP  99 ksqksaasalnl 110
                       ++++++a+a ++
  LOC_Os02g42380.1 138 RQRQESAAADAV 149
                       444444433333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3153139IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00954108IPR017887Transcription factor TCP subgroup
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSSRDAAATF HVYQPVQIPT ATVAPAAAVS AAPAEAVAQL VPAPSKKAAG AAGGKDRHSK  60
VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG TGTTPAAFVS  120
SSAPSTSSSH QHTLLGKRQR QESAAADAVS VAGAASAFWA ALPAPGRPDA WGFSPLDAQP  180
TYVPMAQAHH HHLNLLAALS GAARRAEEES R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.512040.0flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329715860.0
Expression AtlasQ6H878-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00655PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g42380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g42380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0040670.0AP004067.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1581_H09.
GenBankAK0615680.0AK061568.1 Oryza sativa Japonica Group cDNA clone:006-311-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624938.11e-149PREDICTED: transcription factor TCP7
SwissprotQ9FMX22e-41TCP7_ARATH; Transcription factor TCP7
TrEMBLQ6H8781e-149Q6H878_ORYSJ; Os02g0635800 protein
STRINGLOC_Os02g42380.11e-148(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9221459
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.18e-28TCP family protein