PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g40070.1
Common NameOsJ_07517
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 701aa    MW: 73182.9 Da    PI: 6.8005
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g40070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-10302358155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  LOC_Os02g40070.1 302 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 358
                       57*******************5444.2455535555.7799999*************98 PP

2AP249.79e-16401452155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  LOC_Os02g40070.1 401 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 452
                       89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-8302358IPR001471AP2/ERF domain
CDDcd000189.40E-17302368No hitNo description
SuperFamilySSF541713.33E-14302368IPR016177DNA-binding domain
SMARTSM003805.8E-22303372IPR001471AP2/ERF domain
PROSITE profilePS5103217.108303366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-11303367IPR001471AP2/ERF domain
PRINTSPR003673.7E-6304315IPR001471AP2/ERF domain
PfamPF008473.2E-10401452IPR001471AP2/ERF domain
CDDcd000183.87E-23401462No hitNo description
SuperFamilySSF541715.75E-18401462IPR016177DNA-binding domain
SMARTSM003808.1E-34402466IPR001471AP2/ERF domain
PROSITE profilePS5103219.467402460IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18402461IPR001471AP2/ERF domain
PRINTSPR003673.7E-6442462IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENPQP HQDSSPPAAI DVSGAGDFYG LPTSQPTAAD AHLGVAGHHH  60
NASYGIMEAF NRGAQEAQDW NMRGLDYNGG ASELSMLVGS SGGKRAAAVE ETEPKLEDFL  120
GGNSFVSEQD HHAAGGFLFS GVPMASSTNS NSGSNTMELS MIKTWLRNNG QVPAGHQPQQ  180
QQPAAAAAAA QQQAHEAAEM STDASASSFG CSSDAMGRSN NGGAVSAAAG GTSSQSLALS  240
MSTGSHSHLP IVVAGGGNAS GGAAESTSSE NKRASGAMDS PGGGAIEAVP RKSIDTFGQR  300
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD KEDKAARAYD LAALKYWGTT  360
TTTNFPISNY EKELDEMKHM TRQEYIAYLR RNSSGFSRGA SKYRGVTRHH QHGRWQARIG  420
RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSTLPVGGA  480
ARRLKEAADH AEAAGATIWR AADMDGAGVI SGLADVGMGA YAASYHHHHH HGWPTIAFQQ  540
PPPLAVHYPY GQAPAAPSRG WCKPEQDAAV AAAAHSLQDL QQLHLGSAAA HNFFQASSSS  600
TVYNGGGGGY QGLGGNAFLM PASTVVADQG HSSTATNHGN TCSYGNEEQG KLIGYDAMAM  660
ASGAAGGGYQ LSQGSASTVS IARANGYSAN WSSPFNGAMG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.498590.0callus| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887330.0
Expression AtlasA3A915-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g40070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g40070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120700.0AK112070.1 Oryza sativa Japonica Group cDNA clone:001-120-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623974.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA2X7670.0A2X767_ORYSI; Putative uncharacterized protein
TrEMBLA3A9150.0A3A915_ORYSJ; Uncharacterized protein
STRINGLOC_Os02g40070.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-121AP2 family protein