PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g39220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1542aa    MW: 175336 Da    PI: 8.167
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g39220.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.11.5e-23726816290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       fYn+YAke GFsvrk++ ++   +  +t+r+++Cs+eg+r+e   + ++++r+++a tr+gC+a +++k++k +g w v k + +HnH+la
  LOC_Os02g39220.1 726 FYNRYAKEKGFSVRKNYIRRDPITVAVTHRQYQCSREGHRKEVYMEaANRSREPKALTRCGCNALFEIKLDKkKGDWFVVKYVAKHNHPLA 816
                       9****************************************998876789999******************99****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF479544.33E-2091237IPR013763Cyclin-like
PfamPF001342.2E-16116237IPR006671Cyclin, N-terminal
Gene3DG3DSA:1.10.472.104.6E-15126231IPR013763Cyclin-like
CDDcd000436.44E-8135230No hitNo description
SMARTSM003852.9E-4140231IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.104.7E-18232316IPR013763Cyclin-like
PfamPF029844.3E-11240316IPR004367Cyclin, C-terminal domain
SMARTSM013328.0E-15240352IPR004367Cyclin, C-terminal domain
CDDcd000432.94E-6240317No hitNo description
SuperFamilySSF479541.53E-11241316IPR013763Cyclin-like
SMARTSM003850.24244355IPR013763Cyclin-like
PfamPF031017.5E-22726816IPR004330FAR1 DNA binding domain
PfamPF105516.7E-349381032IPR018289MULE transposase domain
PROSITE profilePS509669.87812031254IPR007527Zinc finger, SWIM-type
SMARTSM005750.006612291256IPR006564Zinc finger, PMZ-type
SuperFamilySSF540014.32E-814221478No hitNo description
Gene3DG3DSA:3.30.310.1301.9E-614381475No hitNo description
PfamPF029022.3E-414401479IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1542 aa     Download sequence    Send to blast
MFGPYSGGGG VPLPQMDADT YVRTIAAMPP HPLAPPPDSP RTPHTYVGFL PVFGDLPPLT  60
GAVLQEPVPV PPEQRADQPV AVATENSAPT RPQLCAPYDD EVEATLRAME TNPAERPSPY  120
FLETTQGGRM SALVRASMIA FMGEFSRKNK LADGTLQRAA YFLDRYLSVT PESDDALQLR  180
LVGATAVFLA AKYEDQYTLR KIDASMVAAR CGYTSETRHK MVSIMETEML AALGFNLGGP  240
TAYTFVEHFT RYYGDGEEEK QLKEAAHRVA DGTLLTYGFH RYLPSMVAAS SIFLARLHEL  300
GHEPWSNDLA ELTAFSTLIS LQLWPNRGFV EHFTRYNSRG EEELRVQRLE RDIADQSLMN  360
YGCPRATCRP WRRRPAASIF IARCSLNRPD RSGLWSTELQ ELTGLQGAVI RKKQAHLVCP  420
VRSSYCAMRG RARSHRRRLA VPRSHRMDQP RTVEPPSSHR RRRLATPRKQ SPPPPPPSTK  480
SPRFAAARGR PTCEAVVVVR GDAEADDPMG GDGAGGAIGS VDEGDSVAGG EADGGDPGWL  540
RRVSLSTRAS GRLNVSARAL PSAGHVRAGV TAASRCSGPL HRRSRRALLD PATAAPDLPP  600
PSRETSLPPL TDTGERHLPR RRHRRSPVDF ADNDERTLDC TGIATAGDVV CGEHDHDARD  660
TGELVAALAG LGEDDEHLRG AGRVGSGERT CMGDEMGDNF ISLEEQEEYR TMTAMRFKTE  720
KEGFLFYNRY AKEKGFSVRK NYIRRDPITV AVTHRQYQCS REGHRKEVYM EAANRSREPK  780
ALTRCGCNAL FEIKLDKKKG DWFVVKYVAK HNHPLAKSDE VAFLRSHRTI SNAQKANILE  840
LKEVGLRQHQ VMDVMERHHG GFDATGFVSR DLYNYFTRLR KKHILGGDAE RVIKYFQWRQ  900
KHDMEFFFEY ETDEAGRLKR LFWSDPQSRI DYDAFGDVVV FDSTYRVNRY NLPFIPFVGV  960
NHHGSTIIFG CAIVADEKVA TYEWILKQFL DCMYQKHPRA LITDGDNAMR RAIAAVMPDS  1020
EHWLCTWHIE QNMARHLRPD MLSDFRTLVH APYDHEEFER KWVEFKVKHK GCEDNQWLVR  1080
MYNLRKKWAT AYTKGLFFLG MKSNQRSESL NSKLHRYLDR KMSLVLLVEH YEHCLSRMRY  1140
REAELDCKAS QSIPFTSNDA SFIEKDAARI FTPAVFKKLK LVIAKSMDWE VIDCIEEDNL  1200
VKYVISMKGD SEMLQILNCT YVESTMKSIN CTCRKMDREC LPCEHMVAIM HHLKLDAIPE  1260
ACIVRRWTIK AKHMFPSDRY GEVYTWSNQM ERYHRLRSMG TEVFFKCSVS KETTLMVMEM  1320
LEKLDLETDE CETKNSDLSL CGHVLAQSLR TDIESHDKVH DPMEIVPKGA PTKRLRGFME  1380
KRVRRCGIAE APHIIESDDD SLFEKNMVDT IGARLRRPHG RVIDAYIMLI KDMQVKVQES  1440
MIFLPLNRNS THWYVAVLNG AKEKIQILDS MRMEKSYYDK DKDLNNTHWN GKELSPEFNE  1500
MDTTTTFKHK VVANLINSTM NEVIEVQQDI KRLVTEANVG N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jgz_B7e-14953371236G2/MITOTIC-SPECIFIC CYCLIN-B1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g39220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g39220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0041110.0AP004111.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1058_F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6K8S40.0Q6K8S4_ORYSJ; Putative far-red impaired response protein
STRINGLOC_Os02g39220.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-96FAR1-related sequence 5