PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g38130.1
Common NameLOC4329852, OJ1126_D09.15, Os02g0594800, OSNPB_020594800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 394aa    MW: 43588.8 Da    PI: 5.4359
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g38130.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.32.3e-30572001128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                       lp+G++F+P+d el+ e+L++k+          +  +e+i+++d    i++++P++Lp  +k++ ++ +fF++ +++y  g+rk+r+      
  LOC_Os02g38130.1  57 LPAGVKFDPSDLELL-EHLEQKIGLGGskphtfI--DEFIPTIDndegICYSHPENLP-GMKKDGTSGHFFHRVSNAYGCGQRKRRKisncdh 145
                       799************.99****876654555332..233444433445**********.677888999******************8789999 PP

               NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          +++ +W++tgk+k++++ kg ++g kk++v+y  ++r  k+ k++Wvmh+y+l
  LOC_Os02g38130.1 146 vvsVEHVRWHKTGKSKAIVE-KGVTKGWKKIMVLYksSQRGAKPDKANWVMHQYHL 200
                       8887899*************.999***********4435777888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3542219IPR003441NAC domain
PROSITE profilePS5100528.86957219IPR003441NAC domain
PfamPF023654.1E-1358200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MARSWLITGR GVAKKIRNAP HCSSRPISEL GAEAQMECPN CKHVIDNSDV AIQWPGLPAG  60
VKFDPSDLEL LEHLEQKIGL GGSKPHTFID EFIPTIDNDE GICYSHPENL PGMKKDGTSG  120
HFFHRVSNAY GCGQRKRRKI SNCDHVVSVE HVRWHKTGKS KAIVEKGVTK GWKKIMVLYK  180
SSQRGAKPDK ANWVMHQYHL GAEEDEKDGE LVVSKISYQL HGKQIDKSET GNADEESDAF  240
AARVGPKTPK SNTPQPCRLK NSPCETENYD PILEDQDEEE SNIPIVSLKD DAGNPAWCAG  300
ETQAAREAVQ ACPNLDESLR CHEVLDSFYH ETLLPSDRPI LSQGGNEILD RNLNAVYGLP  360
DLYNVDLGTP PDFQLADLQF GSQESIGNWL DSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.505850.0callus| flower| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379915760.0
Expression AtlasQ6ZI65-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g38130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g38130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1219530.0AK121953.1 Oryza sativa Japonica Group cDNA clone:J033107L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624086.10.0PREDICTED: NAC domain-containing protein 73
SwissprotQ6NQK27e-82NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A0D3F7430.0A0A0D3F743_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NH840.0A0A0E0NH84_ORYRU; Uncharacterized protein
TrEMBLI1P1S70.0I1P1S7_ORYGL; Uncharacterized protein
TrEMBLQ6ZI650.0Q6ZI65_ORYSJ; No apical meristem (NAM)-like protein
STRINGLOC_Os02g38130.10.0(Oryza sativa Japonica Group)
STRINGORGLA02G0193300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.11e-90NAC domain containing protein 44