PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g36360.3
Common NameLOC4329736, Os02g0572900, OSJNBb0046L23.5, OSNPB_020572900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 385aa    MW: 40393.5 Da    PI: 7.0355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g36360.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.5e-07174195223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C +Cgk F+r  nL+ H+r H
  LOC_Os02g36360.3 174 FCDICGKGFRRDANLRMHMRAH 195
                       6*******************99 PP

2zf-C2H212.40.00047259283123
                       EEETTTT..EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                       y C+ Cg  k+F    +L++H+r +
  LOC_Os02g36360.3 259 YACERCGgkKRFAVLADLRSHLRHC 283
                       89********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-6170195No hitNo description
SMARTSM003550.0019173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614173195IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-6175195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SMARTSM0035573221254IPR015880Zinc finger, C2H2-like
SMARTSM0035517259282IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MKSTTHLLAG GGGGGSVAPP TAATAPTLAM EVGDPSGALV GGAGGAGAGG GDGDARDALL  60
RLVALGDRMA AVRRRIAASI SGESGPLSSS DIHSVSSEIS SAAHLVVLNA ASLLSSTVAS  120
LPAPPPPPAT TVQELPPVVV SVPQEPPQEA AKGDGDYDVV ELDASELLAE HVHFCDICGK  180
GFRRDANLRM HMRAHGDRFK TLDALSRPGQ PKPPAGREVR FSCPYAGCNR NRAHRRFRPL  240
KSAVCARNHF RRSHCPKLYA CERCGGKKRF AVLADLRSHL RHCGEEAQWR CSCGTTFSRK  300
DKLFGHLALF EGHTPAIAEP NKGVATAAAE ASISMMEEGG VEANCDREED EEGGFDPKFF  360
QEWMEELRGG AVAPNWSAPS EAGH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.57550.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329813430.0
Expression AtlasQ6YXC5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g36360.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g36360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0056990.0AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627485.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
RefseqXP_015627486.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLQ6YXC50.0Q6YXC5_ORYSJ; Os02g0572900 protein
STRINGLOC_Os02g36360.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.35e-70C2H2 family protein