PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g35690.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 347aa    MW: 37276.8 Da    PI: 10.0248
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g35690.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.74e-1564145286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g++++pk   qCk++++ l+k+yk +k+   +       ++pyf++l+
  LOC_Os02g35690.2  64 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKQPKsdvQCKNRIDTLKKKYKVEKAKPDS-------SWPYFHRLD 145
                       *************************************87889988664334**************99998886.......5******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-2362146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDDDGGASPS SSLSPSRSPS PLPVADPVTV AAAPPGHLAL AIPIPKPGSS SGGGGGGGGR  60
EDAWSDGATS TLIDAWGERF VALGRGSLRH PQWQEVAEVV SSRDGYSKQP KSDVQCKNRI  120
DTLKKKYKVE KAKPDSSWPY FHRLDTLLAP VHKPAGAYPA AAAAGAAGAG NSGSNSAAAA  180
TAARSTAPMA PRVNFPQRTR TQFLPSSGVK RRMPSPPQVS ASSESSDGFP PEPPMAAANG  240
KRRREVEEEV NGADSGHRTQ GLRELAQAIR RFGEVYERVE LAKREQELRM ERDRLEAARE  300
LEDQRVQFFL KMQMELSKAL PCCPAAATTP VQREQCRRSR QRYREW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.180210.0callus| flower| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379902880.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g35690.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g35690
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0048650.0AP004865.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0020C11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623080.11e-171PREDICTED: trihelix transcription factor ASIL1
SwissprotQ9LJG82e-37ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0E0K1B11e-178A0A0E0K1B1_ORYPU; Uncharacterized protein
STRINGLOC_Os02g35690.11e-170(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-31sequence-specific DNA binding transcription factors