PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g34680.1
Common NameLOC4329635, Os02g0551900, OsJ_07105, OSNPB_020551900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 344aa    MW: 38874.4 Da    PI: 7.9463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g34680.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000186688323
                      ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                      C+   Cgk+F +   L++H  +H
  LOC_Os02g34680.1 66 CSyeGCGKTFVDAGALRKHAHVH 88
                      77779**************9887 PP

2zf-C2H215.55e-0593117123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       y+C+   C+k F ++s LkrH   H
  LOC_Os02g34680.1  93 YVCHyaGCDKKFLDSSKLKRHFLIH 117
                       9********************8877 PP

3zf-C2H221.94.7e-07123147123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk Fs   nLk H++tH
  LOC_Os02g34680.1 123 FVCPheGCGKAFSLDFNLKAHMKTH 147
                       89**********************9 PP

4zf-C2H213.40.00023153178123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++C+   C ++F++ s L+ Hi+  H
  LOC_Os02g34680.1 153 HVCKypECARRFTQESKLRAHIKQqH 178
                       789999****************9877 PP

5zf-C2H212.10.00061221246123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       y+Cp   C k + + + L+ H+++ H
  LOC_Os02g34680.1 221 YVCPydGCAKAYIHEYKLNLHLKKeH 246
                       99*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-145990IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9286493IPR007087Zinc finger, C2H2
SMARTSM003550.00216488IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.08E-66589No hitNo description
PROSITE patternPS0002806688IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-1391113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.15293122IPR007087Zinc finger, C2H2
SMARTSM003550.003293117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
SuperFamilySSF576675.71E-14104156No hitNo description
Gene3DG3DSA:3.30.160.603.8E-20114148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.884123152IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4123147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-6152174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.118153178IPR007087Zinc finger, C2H2
SMARTSM003550.049153178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155178IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-8213243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.64E-5215244No hitNo description
PROSITE profilePS501578.85221251IPR007087Zinc finger, C2H2
SMARTSM003550.012221246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMQTAGRRRH RWVKEWVPQD LVVAGGPCAL YKWVREDRLS ALKSRDKEQE AELAKPEPTT  60
EVLFLCSYEG CGKTFVDAGA LRKHAHVHGE RQYVCHYAGC DKKFLDSSKL KRHFLIHTGE  120
KNFVCPHEGC GKAFSLDFNL KAHMKTHSVD NYHVCKYPEC ARRFTQESKL RAHIKQQHEK  180
GGLQNPGGSA TNRSGLADHS HNSHTPKPSA APPTPSADRP YVCPYDGCAK AYIHEYKLNL  240
HLKKEHPNHY QDAGAQAASS KMSKRRSKPS LTAKMPLPKV PKRRGYTEPY QPPVSVVEEH  300
QWPRNVLYED DSEETEEEGD NVGDGARYRA ASSDDDEETE DEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-33661748114PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277283PKVPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.884270.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329889690.0
Expression AtlasQ0E0H1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g34680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g34680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1037600.0AK103760.1 Oryza sativa Japonica Group cDNA clone:J033143G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627689.10.0PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X1
SwissprotQ2V3L31e-101Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLA0A0E0NGA50.0A0A0E0NGA5_ORYRU; Uncharacterized protein
TrEMBLQ0E0H10.0Q0E0H1_ORYSJ; Os02g0551900 protein
STRINGLOC_Os02g34680.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38561626
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.18e-98C2H2 family protein