PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g34370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 348aa    MW: 36037.6 Da    PI: 7.442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g34370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.59.7e-0894118731
                       HHHHHHHHHHHHHHHHHHCTSCCC. CS
               HLH   7 erErrRRdriNsafeeLrellPkas 31 
                        rEr RR+r+N+ f+ +r+l+P+++
  LOC_Os02g34370.1  94 VRERERRRRMNDMFAGIRRLVPNLP 118
                       59*********************64 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-785121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-493120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-595118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSQEEQRHGR QLPLATSGVI TFNGVPLSPL TAGAESDGDD DDVVIVDACN NGKRKVGDGE  60
EEGRGSQGGD DDDDVVAVHG GGGGGGNRAC MFAVRERERR RRMNDMFAGI RRLVPNLPEK  120
GEEVRMEAQK QELQRERDRL AMEVAAAAGG AGASSSSSSA AAAAVTVAAY GPAGAVGSSS  180
SSAAAAARAN TVVPVPQRAA RGATAPTPRP VAPPQAGTWP LPAPAAMPPP PPPPTGAAAV  240
APPPSLKTWS WGDNVVVSVL GNIGNMTVRA PLRRTGVLAM ASAALKRYNI TAVTSLSGTD  300
ASRTQNMFMF YTIIDMPDRQ PQFVHPKVFE AMYRAAAAEI AAWINCY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.813970.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g34370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g34370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0056110.0AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624470.11e-156PREDICTED: uncharacterized protein LOC107276567
TrEMBLA0A0E0NG771e-157A0A0E0NG77_ORYRU; Uncharacterized protein
STRINGLOC_Os02g34370.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1814277