PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g32590.1
Common NameHSF07, HSFA3, LOC4329526, Os02g0527300, P0458B05.23, P0475F05.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 499aa    MW: 55098.5 Da    PI: 4.5033
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g32590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.18e-35681602103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+++ ++el+ +isw + gnsfvv+d++ fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+ll
  LOC_Os02g32590.1  68 FLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRHSKHLL 151
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       +ki r++s+
  LOC_Os02g32590.1 152 KKIVRRRSS 160
                       *****9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-5564157IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3464157IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-3764157IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.3E-3168157IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-166891IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-16106118IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340107131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-16119131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDHNTDPPPT TMVDAAAALL LEPKLEGYDD DGGGEPLQPA PFVSPLDQLM QPPRPLEALL  60
QGPQLPPFLS KTYDLVCEPE LDGVISWGHA GNSFVVWDPS AFARDVLPHH FKHNNFSSFV  120
RQLNTYGFRK VHADRWEFAH EDFLRHSKHL LKKIVRRRSS PTQQSGLQPG SSGESGLDPE  180
LNTLRREKSA LLQEVTRLKQ EHLQTIEQMS TLNQRLESAE DRQKQMVSFL AKLLQNPTFL  240
RQLKMHRQQK EIDSTRVKRK FLKHVPHGNI DSGESSSQHT GESNLDFSPT SLDLPATHSD  300
ILDLQNFLLE DGDLNLAMLP ENIGLDGIEA PDDIGALVQG FDTQEELELG SGVELLEIPP  360
ASGPRGQDPT IGRSKGKNVL SPGLDATSSE ADCLGSFSDN MGMLSDSMLQ TAGKLMDADD  420
DERIWGVDAS SALQSSCSGT SQQAYGSLVS DPYLMEMANK PEKFWELDFQ ALDDGDLQLD  480
KCVIDDPALQ QQRGNMNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-246016011123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.237780.0callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329871430.0
Expression AtlasQ6H6Q7-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g32590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g32590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019340.0AK101934.1 Oryza sativa Japonica Group cDNA clone:J033073P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623061.10.0PREDICTED: heat stress transcription factor A-3
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A0E0NFR60.0A0A0E0NFR6_ORYRU; Uncharacterized protein
STRINGLOC_Os02g32590.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10024911
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.13e-70heat shock transcription factor A3
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]