PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g32040.1
Common NameOs02g0520000, OSNPB_020520000, P0461D06.33
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 240aa    MW: 25158.2 Da    PI: 4.5898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g32040.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-173988255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a++ ++g
  LOC_Os02g32040.1 39 RYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARTIRG 88
                      588******.**********843...4***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.56E-263897No hitNo description
PROSITE profilePS5103221.2853996IPR001471AP2/ERF domain
PfamPF008473.5E-103988IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-283996IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-213996IPR016177DNA-binding domain
SMARTSM003802.2E-3139102IPR001471AP2/ERF domain
PRINTSPR003671.2E-84051IPR001471AP2/ERF domain
PRINTSPR003671.2E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDFYFFSSSA PAPEKKTRRQ QQQQQQREQE GGGGGNEARY LGVRRRPWGR YAAEIRDPAT  60
KERHWLGTFD TAEEAAVAYD RAARTIRGAA ARTNFAYPDL PPGSSLTPYL SPDLSTNDLH  120
RHYYGAGAGA DTQTAAALPA PAQPAHGGDA QEMAYGGGGG QNVGGVFDVV GGGGGAAWCD  180
ASELEFGGYD DAGASAAAAA VYFEEGYVHS PMFSPMPAAD EVAADGFQLG GSSSSSYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-174095662ATERF1
3gcc_A3e-174095662ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6H4L1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g32040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g32040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0058450.0AP005845.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0461D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624455.12e-98PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLQ6H4L11e-172Q6H4L1_ORYSJ; Branched silkless 1-like
STRINGLOC_Os02g32040.11e-172(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.14e-23ERF family protein