PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g26430.1
Common NameLOC4329309, Os02g0462800, OSJNBa0035A24.9, OSNPB_020462800, WRKY42
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 254aa    MW: 27141.1 Da    PI: 9.932
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g26430.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29168225258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                        D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+  +p ++++tY g+H+h
  LOC_Os02g26430.1 168 ADDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGEPAMLIVTYDGDHRH 225
                       69************************9888***************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.5E-14125165IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-31155228IPR003657WRKY domain
PROSITE profilePS5081130.515162228IPR003657WRKY domain
SuperFamilySSF1182901.7E-25163228IPR003657WRKY domain
SMARTSM007742.5E-33167227IPR003657WRKY domain
PfamPF031061.1E-24169225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MADPFPAAAR GGEQGGGTAG QLVSTPSRLR TAVASMLNRT GHARFRRAAP VVVQEEEDEA  60
AAAARDAVVR CDGLSASASS SFPSSVTGVT GDGSVSNARA VLPAAGDGDK PPPMQSASDY  120
ASDGRLKRSS DDDGERCHCS KKKRKASWRA RRRIRVPAIS SRNADIPADD YSWRKYGQKP  180
IKGSPYPRGY YKCSTVRGCP ARKHVERDPG EPAMLIVTYD GDHRHGEPGH RRPDEAATTT  240
EHRTTDQTTG RLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20155228274WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329957960.0
Expression AtlasQ6K4Y7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g26430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g26430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1105870.0AK110587.1 Oryza sativa Japonica Group cDNA clone:002-168-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624842.10.0PREDICTED: probable WRKY transcription factor 11
SwissprotQ9SV154e-52WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLQ6K4Y70.0Q6K4Y7_ORYSJ; Os02g0462800 protein
STRINGLOC_Os02g26430.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-36WRKY DNA-binding protein 11