PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g23823.1
Common NameLOC4329217, Os02g0433600, OsJ_06533, OSJNBa0065F08.2, OSNPB_020433600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 344aa    MW: 37814.8 Da    PI: 5.9933
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g23823.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-114089154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r++ +  rE+ RRdr+N+ f+eL + l ++     ++++Ka+iL  A++ +k+L
  LOC_Os02g23823.1 40 RKVQKADREKMRRDRLNEQFQELGSTLDPD----RPRNDKATILSDAIQMLKDL 89
                      5677889********************997....799***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.2243989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1339112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-74093No hitNo description
SuperFamilySSF474596.8E-1440109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-94089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-84595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDPRSSQAQE DGFFHPRDGA CPADSSGKTE CKTQGSIATR KVQKADREKM RRDRLNEQFQ  60
ELGSTLDPDR PRNDKATILS DAIQMLKDLT SQVNKLKAEY TSLSEEAREL TQEKNELRDE  120
KVSLKFEVDN LNTQYQQRMR VLYPWTGMEP SVVIGPPLPY PFSVPVPVPV PIPSGAVPMH  180
PQLQAYPYFR NQTSGTVSNP CTPYMAYTQP IHPPTDQLSN QFSAPVQHSS SNRSHSMAQD  240
SRSKSSALQQ VSCRGKHDDF DDVATDLELK TPGSSAPLQS EIANKDSSSD LKKKQQFIQE  300
TKGSSLTEGS SSSSRCSSSG PPDVSNSIEG GSVADDQRST VQT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.528970.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329798140.0
Expression AtlasQ67U21-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g23823.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g23823
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1039860.0AK103986.1 Oryza sativa Japonica Group cDNA clone:001-017-H10, full insert sequence.
GenBankAK0697900.0AK069790.1 Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626280.10.0PREDICTED: transcription factor bHLH121 isoform X2
TrEMBLQ67U210.0Q67U21_ORYSJ; BHLH transcription factor
STRINGLOC_Os02g23823.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP34011425
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.17e-64bHLH family protein