PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g16680.1
Common NameLOC4328963, Os02g0266800, OsJ_06179, OSNPB_020266800, P0006C08.38
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 299aa    MW: 31745.2 Da    PI: 5.0307
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g16680.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.51.1e-16142193458
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                       +kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l    +  ++
  LOC_Os02g16680.1 142 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 193
                       79**************************************9995554...44443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-17139203IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185141193IPR004827Basic-leucine zipper domain
PfamPF001702.8E-14142191IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.94E-13142194No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-13143194No hitNo description
CDDcd147022.46E-23144194No hitNo description
PROSITE patternPS000360146161IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKKCPSELNF EAFFHGERGE DDADAAADQK PGGGPHPPPF AMFSAADLSS FGFADSVTST  60
ITGVIPNHIW PQSQSLNARH PAVYTIESQS SICAAASPTS ATTLNMKESQ TLGGTSGSDS  120
DSESLLDIEG GPCEQSTNPL DVKRMRRMVS NRESARRSRK RKQAHLADLE TQVDQLRGEN  180
ASLFKQLTDA NQQFTTAVTD NRILKSDVEA LRVKVKMAED MVARGALSCG LGHLGGLSPA  240
LNPRQGACRV PDVLTGLDYA GDDPFTGLSP PEQVQMPGGG EVGDAWGWDN HSNGAMSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRSRKRK
2155162RRSRKRKQ
3157162SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.495140.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO5564080.0
Expression AtlasQ6ETX0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g16680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g16680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706740.0AK070674.1 Oryza sativa Japonica Group cDNA clone:J023063K11, full insert sequence.
GenBankRICRITA1A0.0L34551.1 Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625526.10.0PREDICTED: basic leucine zipper 9 isoform X1
TrEMBLB8AFB80.0B8AFB8_ORYSI; Putative uncharacterized protein
TrEMBLQ407240.0Q40724_ORYSA; Transcriptional activator protein
TrEMBLQ6ETX00.0Q6ETX0_ORYSJ; Os02g0266800 protein
STRINGBGIOSGA006734-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os02g16680.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP69561017
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.16e-40basic leucine zipper 9