PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g16540.1
Common NameLOC4328953, Os02g0265200, OsJ_06167, OSNPB_020265200, P0006C08.18-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 362aa    MW: 38242.5 Da    PI: 4.7227
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g16540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.8e-31175233259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++ tY+geHnh+
  LOC_Os02g16540.1 175 ADVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRSDPNTFILTYTGEHNHS 233
                       69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-32160235IPR003657WRKY domain
PROSITE profilePS5081133.832169235IPR003657WRKY domain
SuperFamilySSF1182901.83E-26172235IPR003657WRKY domain
SMARTSM007742.1E-37174234IPR003657WRKY domain
PfamPF031064.5E-26176232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEEELCGNNW DLDAVVRLGC CRRRISPAAV AQQVDPFASF LQQGVAMEVA AEKEVGVEAA  60
WSFPELTVRD GGGGGLGRDA DELLKAFCAA FPSSSSSKSS PLPTPPPPPP TQPQPEQQKP  120
VTVQENLPAP TTAPARASQP AAARQVPAGG VPRSKRRKNQ QKKVVRHVPA DGVSADVWAW  180
RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRSDPN TFILTYTGEH NHSAPTHRNS  240
LAGTTRNKLP SSSAASAASA QPQPPPPSVV VVGAGGGGAE AAGLSPTTPL RTPSMEEDEE  300
EEEEEELLVE DMEMAGEDEL LFLNGGDDNA ALDGTPMSSL FDIADEPFLP SPWTEPTAAG  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-191762351674WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.500040.0callus| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329767930.0
Expression AtlasQ6ETY2-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g16540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g16540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667750.0AK066775.1 Oryza sativa Japonica Group cDNA clone:J013074N21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623400.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLQ6ETY20.0Q6ETY2_ORYSJ; Os02g0265200 protein
STRINGLOC_Os02g16540.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-44WRKY family protein