PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g16240.1
Common NameOs02g0262500, OSNPB_020262500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 866aa    MW: 101707 Da    PI: 8.3939
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g16240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.74.5e-2415105290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       fYn+YAke GFsvrk++ ++   +  +t+r+++Cs+eg+r+e   + ++++r+++a tr+gC+a +++k++k +g w v k + +HnH+la
  LOC_Os02g16240.1  15 FYNRYAKEKGFSVRKNYIRRDPITAAVTHRQYQCSREGHRKEVYMEaANRSREPKALTRCGCNALFEIKLDKkKGDWFVVKYVAKHNHPLA 105
                       9****************************************998876789999******************99****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-2215105IPR004330FAR1 DNA binding domain
PfamPF105511.6E-34227321IPR018289MULE transposase domain
PROSITE profilePS509669.878492543IPR007527Zinc finger, SWIM-type
SMARTSM005750.0066518545IPR006564Zinc finger, PMZ-type
PROSITE profilePS5060012.878627813IPR003653Ulp1 protease family, C-terminal catalytic domain
PfamPF029021.5E-14646812IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540013.92E-27646827No hitNo description
Gene3DG3DSA:3.30.310.1308.4E-13698808No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MTAMRFKTEK EGFLFYNRYA KEKGFSVRKN YIRRDPITAA VTHRQYQCSR EGHRKEVYME  60
AANRSREPKA LTRCGCNALF EIKLDKKKGD WFVVKYVAKH NHPLAKSDEV AFLRSHRTIS  120
NAQKANILEL KEVGLRQHQV MDVMERHHSG FDATGFVSRD LYNYFTRLRK KHILGGDAER  180
VIKYFQWRQK HDMEFFFEYE TDEAGRLKRL FWSDPQSRID YDAFGDVVVF DSTYRVNRYN  240
LPFILFVGVN HHGSTVIFGC AIVADEKVAT YEWILKQFLD CMYQKHPRGL ITDGDNAMHR  300
AIAAVMPDSE HRLCTWHIEQ NMARHLRPDM LSDFRALVHA PYDHEEFERK WVEFKVKHKG  360
CEDNQWLARM YNLRKKWATA YTKGLFFLGM KSNQRSESLN SKLHRYLDRK MSLVLLVEYY  420
EHCLSRMRYR EADLDCKASQ SIPFTSNDAS LTEKDAARIF APAVFKKLKL VIAKSMDWEV  480
IDCVEEDNLV KYVISMKGDS EMLQILNCTY MESTMKSINC TCRKMDRECL PCEHMVAIMH  540
HLKLDAIPEA CIVRRWTIKA KHMFPSDRYG EVYTWSDQME RYRRLRSMGT EVFFKCSVSK  600
ETTLMVMEML EKLDLETDEC ETNNSDLTLC GHVLAQSSRT DIESHDKVID AYIMLIKDMQ  660
CESPRENGTA FLESTAHCQA WKTNGEQIGT RNKQYQDKRA KVTAKYLQHD MIFLPLNRNS  720
THWYVAVLNG AKEKIQILDS MRMDKSYYDK DKDLNNTIKG IEKFIQYARL EDEVENKWKN  780
TKITNWPFCP MKVPQQSDSW SCGLHTLKFI QHWNGKELSP EFNEMDTTTT FKHKVAANLI  840
NSTMNEVIEV QQDIKRLVTE ANEGN*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0VHJ2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g16240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g16240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0056310.0AP005631.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0049K19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632970.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0P0VHJ20.0A0A0P0VHJ2_ORYSJ; Os02g0262500 protein
STRINGLOC_Os02g16240.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-96FAR1-related sequence 5