PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g16140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 364aa    MW: 40755.8 Da    PI: 5.4759
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g16140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.49.8e-23168256290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        Yn+YAk+vGFs+++++s+ks ++ge  k  fvC+k g +e++ ++   k+ +++ + +  Cka+++vk++  ++wev+++++eH+H+l+
  LOC_Os02g16140.1 168 HYNRYAKRVGFSIKINTSRKSAKDGERDKVMFVCNKCGPEEKTGEAcPPKKMKRSRTRQAACKARMTVKRK-GARWEVIQFVEEHTHPLV 256
                       6*****************************************9999444444555566689*********9.****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-20168256IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDFDLNSIPE LVSGENEPPV HHLLVDDEDR NETYFPINLT DTSMEIPAIN LDDTFDFETM  60
YTTGDAGSLQ AHNVANDEMQ VFEANDEMQI FEGDDEMQVF EEMSDRADTM HTSVATGATT  120
ATANTISSED TGTDDSEAQS APSQDIPCST QVPYLTLTFN SEEEARAHYN RYAKRVGFSI  180
KINTSRKSAK DGERDKVMFV CNKCGPEEKT GEACPPKKMK RSRTRQAACK ARMTVKRKGA  240
RWEVIQFVEE HTHPLVRKFS LKKFLRSHRA IPKEEKDFIT MLHGVNLSAG TIIVTTGNNP  300
TGVPYVRVLF LVQGGKTEPQ TKPYPLDMWK YGSALQQRPE DRSLCGRGAT IKTMHPKPSL  360
KPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g16140.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g16140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0057770.0AP005777.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0026F09.
GenBankAP0056310.0AP005631.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0049K19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0LY811e-167A0A0E0LY81_ORYPU; Uncharacterized protein
STRINGLOC_Os02g16140.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP559546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-16FAR1-related sequence 5