PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g13800.1
Common NameHSF05, HSFC2A, LOC4328809, OJ1705_E12.15, Os02g0232000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 299aa    MW: 31919.5 Da    PI: 6.5176
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g13800.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.52.1e-33151062102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll
  LOC_Os02g13800.1  15 FVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLL 98 
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r++s
  LOC_Os02g13800.1  99 RRIVRRSS 106
                       *****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.8E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.39E-3311104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-5211104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-171538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-2915104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTTTTAEGGG GVAPFVAKTY RMVDDPATDG VIAWGRDSNS FVVADPFAFS QTLLPAHFKH  60
SNFSSFVRQL NTYGFRKVDP DRWEFAHVSF LRGQTHLLRR IVRRSSGGGG AKRKEEAGGC  120
GGGGEAAAGD VDEESAVVAL EVARLRREQR EIEGRVAAMW RRVQETERRP KQMLAFLVKV  180
VGDPQVLRRL VDRDNTNAAA SNADDSAVHH QVKRPRLLLD SSSTTTTHGD RHLVTAAADG  240
FYAGGCGPEA AAAAAFVPDD AVDFTGLYTG GDGFGNAVVD AGVDYPPAYA FPVVDSGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-24610420129Heat shock factor protein 1
5d5v_B8e-24610420129Heat shock factor protein 1
5d5v_D8e-24610420129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.112500.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329916970.0
Expression AtlasQ6EUG4-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g13800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g13800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064880.0AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623571.10.0PREDICTED: heat stress transcription factor C-2a
SwissprotQ6EUG40.0HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A0E0G3Z20.0A0A0E0G3Z2_ORYNI; Uncharacterized protein
TrEMBLA2X2Q30.0A2X2Q3_ORYSI; Putative uncharacterized protein
STRINGLOC_Os02g13800.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-56heat shock transcription factor C1
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]