PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g10080.1
Common NameLOC4328599, Os02g0194200, OsJ_005555, P0437H03.134
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 301aa    MW: 31153.4 Da    PI: 10.1391
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g10080.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-08101126227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+lC+ +     Ck Gd+C+FaHg+
  LOC_Os02g10080.1 101 KTRLCNKYNTAEGCKWGDKCHFAHGE 126
                       8***********************96 PP

2zf-CCCH34.82.8e-11266291127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC +f + G C +GdrC+FaHg+
  LOC_Os02g10080.1 266 FKTKLCENFTK-GSCTFGDRCHFAHGE 291
                       69*********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3333361IPR000571Zinc finger, CCCH-type
SMARTSM003561.33360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-63460IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-63559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-1496131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-898130IPR000571Zinc finger, CCCH-type
SMARTSM003560.06999126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.07599127IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-5101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.53E-14161240IPR004088K Homology domain, type 1
SMARTSM003221.9E-9169239IPR004087K Homology domain
PROSITE profilePS5008414.676170234IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.8E-14170238IPR004088K Homology domain, type 1
CDDcd001055.08E-13172234No hitNo description
PfamPF000131.5E-10172236IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.8E-16263296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-9265295IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8265291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009265292IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9266291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEVGGRKRGK PDGANGAGGK RARESESFQT GVGSKSKPCT KFFSTSGCPF GEGCHFLHHF  60
PGGYQAVAKM TNLGGPAIAP PPGRMPMGNA VPDGPPTPTV KTRLCNKYNT AEGCKWGDKC  120
HFAHGERELG KPMLMDSSMP PPMGPRPTGH FAPPPMPSPA MSTPASFGAS ATAKISVDAS  180
LAGGIIGRGG VNTKQISRVT GAKLAIRDHE SDTNLKNIEL EGTFDQIKNA SAMVRELIVS  240
IGGGAPPQGK KPVGGSHRGG GPGSNFKTKL CENFTKGSCT FGDRCHFAHG ENELRKSAAA  300
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.42650.0callus| flower| leaf| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975987600.0
Expression AtlasQ7F8R0-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g10080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g10080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2423410.0AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626985.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R00.0C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0E0G3830.0A0A0E0G383_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NB440.0A0A0E0NB44_ORYRU; Uncharacterized protein
TrEMBLA2X1Z00.0A2X1Z0_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA007723-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os02g10080.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-49C3H family protein
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]