PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g09650.1
Common NameLOC4328564, OJ1145_F01.32, Os02g0189600, OSJNBb0031B09.11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 200aa    MW: 21092.6 Da    PI: 8.2356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g09650.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-191565256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +++GVr ++ +gr++AeIrdp    k++r++lg++++ae+Aa+a++aa+++l+g+
  LOC_Os02g09650.1 15 RFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTYDSAEDAARAYDAAARALRGA 65
                      69*******.**********83...36*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-311573IPR001471AP2/ERF domain
CDDcd000181.02E-171574No hitNo description
SMARTSM003801.7E-361578IPR001471AP2/ERF domain
PfamPF008471.4E-121564IPR001471AP2/ERF domain
PROSITE profilePS5103223.4061572IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-221574IPR016177DNA-binding domain
PRINTSPR003676.4E-101627IPR001471AP2/ERF domain
PRINTSPR003676.4E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRRGGAAEED AEAARFRGVR KRPWGRYAAE IRDPAKKARV WLGTYDSAED AARAYDAAAR  60
ALRGAKAKTN FPLSLPHAQP QLHHHHHHHL TYPAAAVVAA RPATSSLSST VESFGTRPRP  120
VLPPRPPPPP PIPDGDCRSD CGSSASVVDD DCADAAASPS CRLPFQFDLN LPPGGGGGGG  180
GGFGCAYDDE ELRLTALRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-211175166ATERF1
3gcc_A2e-211175166ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1001270.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166401010.0
Expression AtlasQ6YUU8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g09650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g09650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0058490.0AP005849.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09.
GenBankAP0040460.0AP004046.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1145_F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627177.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627178.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627179.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627180.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627181.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627182.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627183.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627184.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627185.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627186.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627187.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627188.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627190.11e-141PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_015627191.11e-141PREDICTED: ethylene-responsive transcription factor 3
SwissprotO803392e-33ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLI1NY241e-141I1NY24_ORYGL; Uncharacterized protein
TrEMBLQ6YUU81e-141Q6YUU8_ORYSJ; Os02g0189600 protein
STRINGLOC_Os02g09650.11e-140(Oryza sativa Japonica Group)
STRINGORGLA02G0063000.11e-140(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-12erf domain protein 9