PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g08440.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 217aa    MW: 23414.9 Da    PI: 9.8095
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g08440.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-3060119159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ k++++pr+Y+rC++a  Cpvkkkv+rsaed+++++ tYegeHnh 
  LOC_Os02g08440.4  60 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSAEDNTILVATYEGEHNHG 119
                       58***************************99****************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.19955121IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-2959121IPR003657WRKY domain
SuperFamilySSF1182903.79E-2659121IPR003657WRKY domain
SMARTSM007745.4E-3560120IPR003657WRKY domain
PfamPF031063.4E-2561118IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDPWISTQPS LSLDLRVGLP ATAAVAMVKP KPCKRIREEC KPKISKLYVH ADPSDLSLVV  60
KDGYQWRKYG QKVTKDNPCP RAYFRCSFAP ACPVKKKVQR SAEDNTILVA TYEGEHNHGQ  120
PPPPLQSAAQ NSDGSGKSAG KPPHAPAAAP PAPVVPHRQH EPVVVNGEQQ AAAASEMIRR  180
NLAEQMAMTL TRDPSFKAAL VTALSGRILE LSPTKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-2445122175WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.120320.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166416240.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g08440.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g08440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8305910.0CT830591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124O19, full insert sequence.
GenBankAY6769270.0AY676927.1 Oryza sativa (indica cultivar-group) transcription factor WRKY71 (WRKY71) mRNA, complete cds.
GenBankAB1908170.0AB190817.1 Oryza sativa Japonica Group OsWRKY71 mRNA for transcription factor OsWRKY71, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627417.11e-134PREDICTED: probable WRKY transcription factor 40
TrEMBLI1NXW41e-134I1NXW4_ORYGL; Uncharacterized protein
STRINGORGLA02G0057000.11e-134(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.24e-49WRKY DNA-binding protein 18