PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g08440.3
Common NameOsJ_05628
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 232aa    MW: 24961.4 Da    PI: 8.3674
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g08440.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.12.1e-19192230138
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 
                       ++Dgy+WrKYGqK+ k++++pr+Y+rC++a  Cpvkkkv
  LOC_Os02g08440.3 192 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKV 230
                       58***************************99*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.523187231IPR003657WRKY domain
SuperFamilySSF1182902.09E-16191230IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-18191230IPR003657WRKY domain
SMARTSM007749.2E-9192231IPR003657WRKY domain
PfamPF031062.6E-15193230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDPWISTQPS LSLDLRVGLP ATAAVAMVKP KVLVEEDFFH QQPLKKDPEV AALEAELKRM  60
GAENRQLSEM LAAVAAKYEA LQSQFSDMVT ASANNGGGGG NNPSSTSEGG SVSPSRKRKS  120
ESLDDSPPPP PPPHPHAAPH HMHVMPGAAA AGYADQTECT SGEPCKRIRE ECKPKISKLY  180
VHADPSDLSL VVKDGYQWRK YGQKVTKDNP CPRAYFRCSF APACPVKKKV T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119SRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.120320.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166416240.0
Expression AtlasA3A3T5-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g08440.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g08440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1908170.0AB190817.1 Oryza sativa Japonica Group OsWRKY71 mRNA for transcription factor OsWRKY71, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627417.11e-171PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A0D9YNA91e-171A0A0D9YNA9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NAS61e-171A0A0E0NAS6_ORYRU; Uncharacterized protein
TrEMBLA3A3T51e-171A3A3T5_ORYSJ; Uncharacterized protein
TrEMBLQ6QHD11e-171Q6QHD1_ORYSJ; Os02g0181300 protein
STRINGLOC_Os02g08440.11e-170(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-34WRKY DNA-binding protein 40