PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g07450.2
Common NameLOC4328444, OJ1116_A06.31, Os02g0170500, OsHAP5A, OsJ_05556, OSNPB_020170500, P0030G02.21
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 260aa    MW: 28789.3 Da    PI: 4.6278
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g07450.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.37.4e-56831871102
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+d
  LOC_Os02g07450.2  83 QLREFWANQmeeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYD 175
                       89******9777789****************************************************************************** PP

             NF-YC  91 flvdivprdelk 102
                       flvdivprde+k
  LOC_Os02g07450.2 176 FLVDIVPRDEMK 187
                       *********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.2E-3457177IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-3797169IPR009072Histone-fold
PfamPF008085.3E-21105168IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEPSSQPQPV MGVATGGSQA YPPPAAAYPP QAMVPGAPAV VPPGSQPSAP FPTNPAQLSA  60
QHQLVYQQAQ QFHQQLQQQQ QQQLREFWAN QMEEIEQTTD FKNHSLPLAR IKKIMKADED  120
VRMISAEAPV VFAKACEVFI LELTLRSWMH TEENKRRTLQ KNDIAAAITR TDIYDFLVDI  180
VPRDEMKEEG LGLPRVGLPP NVGGAADTYP YYYVPAQQGP GSGMMYGGQQ GHPVTYVWQQ  240
PQEQQEEAPE EQHSLPESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B2e-4390183297NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.108760.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6H707
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g07450.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g07450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1626830.0HQ162683.1 Oryza sativa Japonica Group nuclear transcription factor Y subunit gamma mRNA, complete cds.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0048360.0AP004836.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0030G02.
GenBankAP0041130.0AP004113.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1116_A06.
GenBankAB2880410.0AB288041.1 Oryza sativa Japonica Group OsHAP5A gene for HAP5 subunit of HAP complex, complete cds.
GenBankAK2434290.0AK243429.1 Oryza sativa Japonica Group cDNA, clone: J100067L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627520.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_015627522.10.0PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG74e-74NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A0D3F1A70.0A0A0D3F1A7_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YMY10.0A0A0D9YMY1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G2060.0A0A0E0G206_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NAH20.0A0A0E0NAH2_ORYRU; Uncharacterized protein
TrEMBLA2X1E40.0A2X1E4_ORYSI; Putative uncharacterized protein
TrEMBLI1NXP30.0I1NXP3_ORYGL; Uncharacterized protein
TrEMBLQ6H7070.0Q6H707_ORYSJ; HAP5 subunit of HAP complex
STRINGBGIOSGA007055-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os02g07450.10.0(Oryza sativa Japonica Group)
STRINGORGLA02G0049900.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-74nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Thirumurugan T,Ito Y,Kubo T,Serizawa A,Kurata N
    Identification, characterization and interaction of HAP family genes in rice.
    Mol. Genet. Genomics, 2008. 279(3): p. 279-89
    [PMID:18193457]