PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g06584.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 309aa    MW: 35815.9 Da    PI: 10.519
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g06584.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-071134126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+lC  ++r G C++ d+C+FaHg
  LOC_Os02g06584.3 11 YKTKLCALWQR-GNCNR-DTCSFAHG 34
                      9**********.*****.*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-11542IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.69E-5940IPR000571Zinc finger, CCCH-type
SMARTSM003560.00161035IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1361036IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-51134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLGPPRRGPA YKTKLCALWQ RGNCNRDTCS FAHGHGDIRR PPSSRGAFTH HPGRRDYRAG  60
DFRGRIDRRF SPRRRHSPGR ESRGHRPLYD RRPSSRERDS SYSRSPSRKS ERRHEKKTDD  120
GETNSSRSLS LSDNNDEKKK DKFSSGDEKE DHEKQLKQIR LDMEALRDDK TQMEVILDEK  180
IDEVRKISSK VNDLEVQLRR EKDECHRMTS KMKKFIKAHA RFLKAQEEVK RSQARFERLG  240
DLLASDILKR GANEEGSSVN EDLNERSPNT AATKKRSIPY STSEEAKAGQ RFSRQTCFAL  300
HWHGCSCY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.155531e-95callus| flower| leaf| panicle| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g06584.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g06584
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221030.0AK122103.1 Oryza sativa Japonica Group cDNA clone:J033125O22, full insert sequence.
GenBankAK0651980.0AK065198.1 Oryza sativa Japonica Group cDNA clone:J013002E19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624712.10.0PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLI1NXH60.0I1NXH6_ORYGL; Uncharacterized protein
STRINGLOC_Os02g06584.20.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-33C3H family protein