PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g05510.1
Common NameGATA17, LOC4328300, Os02g0148500, P0479D12.16, TIFY2A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 329aa    MW: 34856.5 Da    PI: 4.7257
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g05510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.19.3e-17236273136
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                       C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ kg++
  LOC_Os02g05510.1 236 CHHCGISAasTPMMRRGPDGPRTLCNACGLMWANKGTM 273
                       *****88888*************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.794100135IPR010399Tify domain
SMARTSM009792.2E-7100135IPR010399Tify domain
PfamPF062003.7E-10103134IPR010399Tify domain
PfamPF062035.5E-16161203IPR010402CCT domain
PROSITE profilePS5101713.384161203IPR010402CCT domain
PROSITE profilePS501149.249230278IPR000679Zinc finger, GATA-type
SMARTSM004012.2E-12230283IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12234286No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15235276IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.61E-14235279No hitNo description
PROSITE patternPS003440236263IPR000679Zinc finger, GATA-type
PfamPF003201.2E-14236273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSGHHEAKPY QPRRGPAPAD EEAAPAAAAD EAEAEAEVEA MERYEQEQEY EEGEEGEEEE  60
YEGGEGVPMD ADASAAAVAG MDPHGEMVPV AGGEAGGGYP HVASNTLTLS FQGEVYVFES  120
VSAERVQAVL LLLGGRELAP GSGSVPSSSA AYSKKMNFPH RMASLMRFRE KRKERNFDKK  180
IRYTVRKEVA LRMQRNRGQF TSSKSKAEEA TSVITSSEGS PNWGAVEGRP PSAAECHHCG  240
ISAASTPMMR RGPDGPRTLC NACGLMWANK GTMREVTKGP PVPLQIVPAA TNDVQNGIVE  300
ATGVEQHNSA VEEAVSAANG HESQSGVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.63900.0callus| flower| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329789550.0
Expression AtlasQ6Z433-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g05510.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g05510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8470150.0EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.
GenBankAK0689310.0AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622990.10.0PREDICTED: GATA transcription factor 17 isoform X1
SwissprotQ6Z4330.0GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A0E0N9V10.0A0A0E0N9V1_ORYRU; Uncharacterized protein
STRINGLOC_Os02g05510.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-70ZIM-LIKE 2
Publications ? help Back to Top
  1. Reyes JC,Muro-Pastor MI,Florencio FJ
    The GATA family of transcription factors in Arabidopsis and rice.
    Plant Physiol., 2004. 134(4): p. 1718-32
    [PMID:15084732]
  2. Ye H,Du H,Tang N,Li X,Xiong L
    Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice.
    Plant Mol. Biol., 2009. 71(3): p. 291-305
    [PMID:19618278]