PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g03960.1
Common NameLOC4328205, Os02g0132500, OsJ_05262, OSNPB_020132500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 164aa    MW: 16895 Da    PI: 7.5194
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g03960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.23.2e-123679447
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47
                       +r++r+ +NRe+ArrsR RK+  ++ L+  v+ L  eN   + 
  LOC_Os02g03960.1 36 QRRAKRMLSNRESARRSRMRKQRHLDDLTAQVAHLRRENAHVAT 79
                      689************************************87664 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.6E-163397IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7833577IPR004827Basic-leucine zipper domain
PfamPF001701.6E-103678IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.8E-1037109No hitNo description
SuperFamilySSF579593.05E-113787No hitNo description
CDDcd147021.51E-153886No hitNo description
PROSITE patternPS0003604055IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0080149Biological Processsucrose induced translational repression
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009071anatomyanther wall tapetum
PO:0001013developmental stageH late unicellular microspore stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MASSSGSGGS AVSAATAAAG GSSSAAEEEL RALMEQRRAK RMLSNRESAR RSRMRKQRHL  60
DDLTAQVAHL RRENAHVATA LGLTTQGLLA VDAENAVLRT QAAELAARLA SLNDILSCIN  120
TNGAAAAAAA ALTVAAATDP LLAFDSAAFD DLFRSSPELF QLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14956RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.214420.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329809100.0
Expression AtlasQ0E476-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00470DAPTransfer from AT4G34590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g03960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g03960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0049970.0AP004997.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0030G11.
GenBankAK0708870.0AK070887.1 Oryza sativa Japonica Group cDNA clone:J023064O22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622690.11e-109PREDICTED: ocs element-binding factor 1
TrEMBLA2X0K01e-109A2X0K0_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0G0P01e-109A0A0E0G0P0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N9D21e-109A0A0E0N9D2_ORYRU; Uncharacterized protein
TrEMBLI1NWZ11e-109I1NWZ1_ORYGL; Uncharacterized protein
TrEMBLQ0E4761e-109Q0E476_ORYSJ; Os02g0132500 protein
STRINGLOC_Os02g03960.11e-108(Oryza sativa Japonica Group)
STRINGBGIOSGA007184-PA1e-108(Oryza sativa Indica Group)
STRINGORGLA02G0024700.11e-108(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5511678
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.13e-28G-box binding factor 6