PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g03690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family BES1
Protein Properties Length: 802aa    MW: 88227 Da    PI: 6.812
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g03690.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822171.35.3e-53572041138
            DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspe 91 
                       gg+g++++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl   ++++ g ++ +s+e
  LOC_Os02g03690.1  57 GGGGEREREREKERTKLRERHRRAITSRMLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSVE 149
                       68999**********************************************************************998999************ PP

            DUF822  92 sslq.sslkssalaspvesysaspksssfpspssldsislasa.......asllp 138
                       +++  s+l+s+a+ +p++s+++++++++++spsslds+ +a++        ++ +
  LOC_Os02g03690.1 150 TPSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVADQsiknekyGNSDS 204
                       **99899*********************************998666555433344 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.7E-4958211IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.809.1E-172314761IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514451.93E-173314794IPR017853Glycoside hydrolase superfamily
PfamPF013731.3E-80339704IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49352366IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49373391IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49486508IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49559578IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49593609IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49610621IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49628651IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49666688IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MSLKHPHSPV LDGDPPPHRR PRGLVSTPPP PAVAADTSPS PSPSPAAPPP RRRGGGGGGG  60
EREREREKER TKLRERHRRA ITSRMLSGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVHP  120
DGTTFRASSQ PLHPPTPQSP GIFHVNSVET PSFTSVLNSY AIGTPLDSQA SMLQTDDSLS  180
PSSLDSVVVA DQSIKNEKYG NSDSVSSLNC LENHQPVELE VVLPPPLAAL LVCGSTVVQL  240
MGGSMAGSAD GHPEEEQRER SGDGRVGACA GAAAGAEPVP AAVHSSSSHA VSAVIAAIGS  300
LTRASAALAG DYTRTPYIPV YASLPMGIIN SHCQLIDPEG IRAELMHLKS LNVDGVIVDC  360
WWGIVEAWIP HKYEWSGYRD LFGIIKEFKL KVQAVLSFHG SGETGSGGVS LPKWVMEIAQ  420
ENQDVFFTDR EGRRNMECLS WGIDKERVLR GRTGIEAYFD FMRSFHMEFR NLTEEGLISA  480
IEIGLGVSGE LKYPSCPERM GWRYPGIGEF QCYDRYMQKN LRQAALSRGH LFWARGPDNA  540
GYYNSRPHET GFFCDGGDYD SYYGRFFLNW YSGILIDHVD QVLSLATLAF DGVETVVKIP  600
SIYWWYRTAS HAAELTAGFY NPTNRDGYSP VFRMLKKHSV ILKFVCYGPE FTIQENNEAF  660
ADPEGLTWQV MNAAWDHGLS ISVESALPCL DGEMYSQILD TAKPRHDPDR HHVSFFAYRQ  720
LPSFLLQRDV CFSELGNFVK CMHDGSLIKI VVRVRTIIAH QSGSSALDVL MQRLTVLCIR  780
GVSTYPIKII RSRYLTTVIA L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12231774311442Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.494270.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379896720.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g03690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g03690
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0E0N9A00.0A0A0E0N9A0_ORYRU; Beta-amylase
STRINGLOC_Os02g03690.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP97651112
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2